PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_141030_hqpq.t1
Common NameSOVF_141030
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARF
Protein Properties Length: 664aa    MW: 73712.7 Da    PI: 5.695
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_141030_hqpq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.3e-23124224198
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+lt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv +++L +gD +vF +   
  Sp_141030_hqpq.t1 124 FVKILTASDTSTHGGFSVLRKHANEClppldMSQPTPTQELVATDLHGYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLAAGDAFVFLR--G 213
                        89*****************************77777888*************************************************3..3 PP

                        SEE..EEEEE- CS
                 B3  88 sefelvvkvfr 98 
                        +++ l+v+v+r
  Sp_141030_hqpq.t1 214 DNGDLRVGVRR 224
                        77778**9998 PP
2Auxin_resp103.13.5e-34250329183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a ha++t s+F+v+Y+Pr+  s+F+v v+k+++a+++k+s+GmRf m+fe+ed +err++Gt+vgv+d++  +W++SkWrsLk
  Sp_141030_hqpq.t1 250 ARHAVNTCSMFTVYYKPRS--SQFIVGVNKYLEAVNHKFSIGMRFNMKFEGEDTPERRFTGTIVGVEDVSA-QWSGSKWRSLK 329
                        6799**************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-38112253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-39116239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-19123224No hitNo description
SMARTSM010191.4E-20124226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139124226IPR003340B3 DNA binding domain
PfamPF023626.3E-21124224IPR003340B3 DNA binding domain
PfamPF065077.0E-32250329IPR010525Auxin response factor
PfamPF023092.3E-7533584IPR033389AUX/IAA domain
SuperFamilySSF542778.5E-14545624No hitNo description
PROSITE profilePS5174527.52548640IPR000270PB1 domain
PfamPF023094.5E-7593635IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MAERRNNEAF AGMGGEALYT ELWRACAGPL VDVPQIGERV FYFPQGHMEQ LQATTNEESD  60
EQIPRFNLPS KILCQVLDIV LKAEPETDEV YAQITLVPEK DQDVELKSSD SSLVDPPRPK  120
VQSFVKILTA SDTSTHGGFS VLRKHANECL PPLDMSQPTP TQELVATDLH GYEWHFKHIF  180
RGQPRRHLLT TGWSTFVTSK RLAAGDAFVF LRGDNGDLRV GVRRLVRQQS PMPPSVISSQ  240
SMHLGVLATA RHAVNTCSMF TVYYKPRSSQ FIVGVNKYLE AVNHKFSIGM RFNMKFEGED  300
TPERRFTGTI VGVEDVSAQW SGSKWRSLKV QWDEAAAFHR PDKVSPWEID PFAASIPVNP  360
TPPPTQKTKR SRPSDLPITD ITGGSAASNF WYGSAHTNDF SSPRNQRDNI WTPTYGGNSL  420
RFDKKDDSKA SSVQSCSTPS TYPYLAPSRL GADNSVQVNN GGKSPGSCRL FGIELRNSSY  480
IAPTLEKVTV CPENLSNGAK VTDDTSAGKA DEVQNTQVAE PLKELNEAIS DASQKETPTK  540
QLSQSSTRSR TKVQMQGVAV GRAVDLTMLE GYDELICELE KMFDIKGELQ TRNKWAVVFT  600
DDEGDMMLVG DDPWEEFCNM VRKILIYSSE EVKNMSSKSR LCSPSAEEGT VLSLGTEQKS  660
EAHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1671135212355Auxin response factor 1
4ldw_A1e-1671135212355Auxin response factor 1
4ldw_B1e-1671135212355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846673.10.0auxin response factor 11
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A0K9QU550.0A0A0K9QU55_SPIOL; Auxin response factor
STRINGXP_010696146.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]