PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_140590_pcst.t1
Common NameSOVF_140590
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARF
Protein Properties Length: 620aa    MW: 68617.3 Da    PI: 7.3832
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_140590_pcst.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-24116217199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF   
  Sp_140590_pcst.t1 116 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGVTWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL-- 203
                        89****************************986445444..8999*********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        +++++ l+v+++r 
  Sp_140590_pcst.t1 204 RSENGDLFVGIRRP 217
                        4478888****985 PP
2Auxin_resp113.71.7e-37281364183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a+++ +FevvY+Prast+eF vk+  v++a++v++++GmRfkmafetedss++++ +Gtv++v  ldp++WpnS+Wr+L+
  Sp_140590_pcst.t1 281 AANLAANGRPFEVVYYPRASTPEFFVKTGAVRAAMQVQWCPGMRFKMAFETEDSSRISWfMGTVSSVLVLDPIHWPNSPWRLLQ 364
                        7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-31105216IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-38108219IPR015300DNA-binding pseudobarrel domain
CDDcd100174.31E-21115216No hitNo description
SMARTSM010198.1E-22116218IPR003340B3 DNA binding domain
PfamPF023625.3E-22116216IPR003340B3 DNA binding domain
PROSITE profilePS5086313.324116218IPR003340B3 DNA binding domain
PfamPF065074.2E-32281364IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKEVESCLDR QLWHSCAGGM VQMPEINSKV IYFPQGHIEH AQVNTTDLKN YPKIPPLIPC  60
RISGIKYLAN QENDEVYAKI RLIPLRKNDF DFNDDDDGFI GSNYDMEGSS EKPASFAKTL  120
TQSDANNGGG FSVPRYCAET IFPRLDYSAE PPVQTILAKD VHGVTWKFRH IYRGTPRRHL  180
LTTGWSNFVN QKKLVAGDSI VFLRSENGDL FVGIRRPKRD ILYCGGSSYG GGEGGGCGGG  240
GFGAFLRNDE NRMVRSFEGM GSNNSSSSNN EKMRAESVVE AANLAANGRP FEVVYYPRAS  300
TPEFFVKTGA VRAAMQVQWC PGMRFKMAFE TEDSSRISWF MGTVSSVLVL DPIHWPNSPW  360
RLLQVAWDEP DLLQNVKRVN PWSVESVPNM PPIHMSPFSP PRKKPRLHQV PDQIPFADHL  420
PIPTFPSRLY GPNGSGPGSL FGFAEVVPAG IQGARHANFR QFLSDHIINN KVNYSSLLSN  480
GPDLKFHHGS SFSSKKPIVR ENLSSFLTMA TTLQEETPKE NDTMTPKFML FGKPILTQQQ  540
ISESCSSDSA KTGSNSSDHD NCNDTSMNRS SSSGGEFPSL DSDAGRSLSL SGLSSCDGLY  600
KKIAQHVWQG KILEAEQCAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-84838951391Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863065.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0K9QUC10.0A0A0K9QUC1_SPIOL; Auxin response factor
STRINGXP_010693393.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]