PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_139660_rjuj.t1 | ||||||||
Common Name | SOVF_139660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 133aa MW: 14520.2 Da PI: 4.8678 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.9 | 3.3e-09 | 69 | 131 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee................vikevdiykvePwdLp 48 lp+G+rF+Ptd+el+ ++L+ kv+++++++ e e +i++++P +Lp Sp_139660_rjuj.t1 69 LPAGVRFDPTDQELI-QHLEGKVRRSPNDVGEsssvelhplidefiptLGGENGICYTHPDKLP 131 799************.99*********666445666677777775542233447*******998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-8 | 62 | 132 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.612 | 69 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MTWCNEIDDV QTVEKATFAP PPPPPPPTSS RPVSDNNNSI VVRSVKSCPS CGHQIKFQQQ 60 TKINDLPGLP AGVRFDPTDQ ELIQHLEGKV RRSPNDVGES SSVELHPLID EFIPTLGGEN 120 GICYTHPDKL PGN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021838562.1 | 1e-83 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 9e-44 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A0K9QUK3 | 9e-93 | A0A0K9QUK3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010689784.1 | 8e-46 | (Beta vulgaris) | ||||
STRING | POPTR_0017s04800.1 | 2e-45 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 3e-44 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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