PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_137460_oryc.t2
Common NameSOVF_137460
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MIKC_MADS
Protein Properties Length: 194aa    MW: 22083.6 Da    PI: 9.6157
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_137460_oryc.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.4e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien+  rqvtfskRr+g++KKA+ELS+LCdae+a+i+fss+ klye+s+
  Sp_137460_oryc.t2  9 KKIENTAARQVTFSKRRKGLIKKAQELSTLCDAEIALIVFSSSTKLYEFST 59
                       68***********************************************96 PP
2K-box31.95.7e-12921751798
              K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe..enkaLrkkl 98 
                        l++++a + ke+++ ++e+ +++GedLe L+++eL +Le+ +eks  ++   K + lle+ ++l++k  ++ e   +++L+++l
  Sp_137460_oryc.t2  92 LEEDIAIMSKEVDEKKQELSRMKGEDLEGLDIEELGKLERLVEKSYARVCRMKGNTLLENNKNLKHKISNATEveLHTTLEQQL 175
                        678899999**********************************************************99987522567777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.24161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-29374IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002656.21E-35374No hitNo description
PRINTSPR004041.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.53789181IPR002487Transcription factor, K-box
PfamPF014862.3E-792164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MVRSRIQIKK IENTAARQVT FSKRRKGLIK KAQELSTLCD AEIALIVFSS STKLYEFSTS  60
RVTRVIQKYM RHTGKVPDLV DSSNGIEPKY MLEEDIAIMS KEVDEKKQEL SRMKGEDLEG  120
LDIEELGKLE RLVEKSYARV CRMKGNTLLE NNKNLKHKIS NATEVELHTT LEQQLAISPP  180
TNVAFDTSLR LGLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-19173173MEF2 CHIMERA
6byy_B8e-19173173MEF2 CHIMERA
6byy_C8e-19173173MEF2 CHIMERA
6byy_D8e-19173173MEF2 CHIMERA
6bz1_A1e-18173173MEF2 CHIMERA
6bz1_B1e-18173173MEF2 CHIMERA
6bz1_C1e-18173173MEF2 CHIMERA
6bz1_D1e-18173173MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860771.11e-136MADS-box protein AGL24-like
TrEMBLA0A0K9QV681e-139A0A0K9QV68_SPIOL; Uncharacterized protein
STRINGXP_010691402.18e-71(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.17e-35AGAMOUS-like 24