PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_135460_mmfz.t1
Common NameSOVF_135460
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 584aa    MW: 65951.5 Da    PI: 7.2474
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_135460_mmfz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59.1e-17401221099
                        HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         ++++ l +p kf  ++   + e +++  led++g++Wev+l  +k  g+  + +GW +F k+++L++gDf++F+++ +s+f  +v ++ +
  Sp_135460_mmfz.t1  40 GFAEC-LFVPPKFS-KIlT-S-EVGRKAYLEDSTGKQWEVNL--SKVNGSLSFNTGWYKFTKDHDLEQGDFLLFRYTMDSCF--FVEIYGR 122
                        45555.888*9*98.6633.3.34569***************..99999999************************999999..8888765 PP
2B331.43.3e-105215813294
                        --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        ++k ++l+d+sgr W v +   k+ +  vlt+GWkeF  an++     +vF  d+ + +e++v
  Sp_135460_mmfz.t1 521 KQKLVILKDPSGRDWPVLY--HKRNNINVLTDGWKEFQYANNILPQNECVFLADDLDMGEFRV 581
                        46789**************..999999************************966435555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-2126124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-2027123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-1630120No hitNo description
PfamPF023621.7E-1432121IPR003340B3 DNA binding domain
SMARTSM010193.3E-932123IPR003340B3 DNA binding domain
PROSITE profilePS5086313.84645123IPR003340B3 DNA binding domain
PROSITE profilePS5086310.461489584IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-11499572IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-11518582IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-8521581IPR003340B3 DNA binding domain
CDDcd100171.39E-8525583No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDYEVKACGE CSRKCLLFHR GKCGLPPKIP PFFKVMFGKG FAECLFVPPK FSKILTSEVG  60
RKAYLEDSTG KQWEVNLSKV NGSLSFNTGW YKFTKDHDLE QGDFLLFRYT MDSCFFVEIY  120
GRSGYEKTHT GVHSFKNKIP KTTRNSITRK SPSDPLYEKQ KPSQGNDCCN TYAVPQSEVD  180
MSDIIWTHDD VNDVQKSVVV AEKVGRQEYG IERPQLVPEV DFLMEPCFMT DRESSLARED  240
DRERLLDLSA LEFSGMEPSF TSNKTGKAHT GNASIDTKKY PLSQGAFHEA HNGDPSIDTN  300
KFPLIQGNVV PSKNNQEKLP NSVNKPFPSV SPRLSMPSSL VRPSKTIRES HTWKPSATSD  360
FSQTPENYEE KLSGSVNQPF PSVYPSLNMP SRPVPPSKTI HESRTWDASA ASGFSQPPPG  420
GKLRVVKQEP KEFKQEISGN VSPDTSFDSN MSLKRKVKGN ANPMKDDDEA NRVVKQEPAD  480
FCDLEAAAAF RMTCLASPEN ASYLELPGEL PMMWRQRLYV KQKLVILKDP SGRDWPVLYH  540
KRNNINVLTD GWKEFQYANN ILPQNECVFL ADDLDMGEFR VQFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855210.10.0uncharacterized protein LOC110794539
TrEMBLA0A0K9QVW80.0A0A0K9QVW8_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-13B3 family protein