PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_135010_cfsx.t1
Common NameSOVF_135010
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 366aa    MW: 40992.4 Da    PI: 4.7991
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_135010_cfsx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.13.5e-2130140186
           trihelix   1 rWtkqevlaLiearremeerlrrgk.........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                        rWt+qe l+Li+a+  +e++ ++g+                           +p+W  +s++++++g++r+p qC+++w+nl +++kk+k++
  Sp_135010_cfsx.t1  30 RWTRQENLTLIQAKDITENTPNKGRkissallgspaggrsssssssllfdNTEPKWVVISSYCKQQGVKRGPAQCRKRWSNLLGDFKKVKTW 121
                        8*********************9977888999999999999*******9999**************************************** PP

           trihelix  68 ekkrtsessstcpyfdqle 86 
                        e++ +++++s + + ++l+
  Sp_135010_cfsx.t1 122 ESNLEDKNESFWTMRNDLR 140
                        ****999999999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-42341IPR009057Homeodomain-like
PROSITE profilePS500906.45823112IPR017877Myb-like domain
PfamPF138372.5E-730136No hitNo description
Gene3DG3DSA:1.10.10.601.5E-477114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MPMGSASNGN RIVGQDDGSI TNEKGRRHPR WTRQENLTLI QAKDITENTP NKGRKISSAL  60
LGSPAGGRSS SSSSSLLFDN TEPKWVVISS YCKQQGVKRG PAQCRKRWSN LLGDFKKVKT  120
WESNLEDKNE SFWTMRNDLR KERKLPVSFD VELFKVLEGR ETGAAGAISP LPLQAIATAT  180
ATATATAIAA VSDDAIEFDD EEVLEEEEED DQMLSGGETL SDVKDEGLET PAFEDIKSAD  240
NLTESPVKNF CIPEPISEQQ HHQEFQEQNR NSNQDASKES WEGNSNWDSQ EKVKRRRIST  300
DDHKANCTEA QILTMLEANN KLLNAQLESL NKNWQLDREQ RKESNNELKA SLSKLNDVLI  360
KIAEKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293297KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844713.10.0trihelix transcription factor ASR3-like
TrEMBLA0A0K9QY440.0A0A0K9QY44_SPIOL; Uncharacterized protein
STRINGXP_010696439.11e-134(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-54Trihelix family protein