PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_132120_iify.t1 | ||||||||
Common Name | SOVF_132120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 41063.9 Da PI: 5.7652 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182 | 1.5e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv +yL +k++g+k++l e+i+e+d+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd+ Sp_132120_iify.t1 6 LPPGFRFHPTDEELVAYYLDRKITGRKIDL-EIIPEIDLYKCEPWDLPdKsFLPGKDLEWYFFSPRDRKYPNGSRTNRATRAGYWKATGKDR 96 79****************************.99**************96434445667********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s ++++vg+kktLv+y+grap+g++t+Wvmheyrl Sp_132120_iify.t1 97 PVHS-QKTAVGMKKTLVYYRGRAPHGHRTNWVMHEYRL 133 ****.9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-65 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.989 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLDRKITG RKIDLEIIPE IDLYKCEPWD LPDKSFLPGK 60 DLEWYFFSPR DRKYPNGSRT NRATRAGYWK ATGKDRPVHS QKTAVGMKKT LVYYRGRAPH 120 GHRTNWVMHE YRLLESLSGS TPSLKESYAL CRVFKKTIQN NPRTKEVDVF IPDNECIDEN 180 IQRDNHTSGI ENSRRIRETN QNQEHLLRLD NNNNNDGLFT KFPSEASSEL TNQEGTPTGS 240 ALSTDHDVQA PLFAADEANS SAHFYPFAFD YSSNLYQDMQ MANNYFNLPP LAIDDFPQMN 300 LSETTMALKP IDHHHQQEMN NLGCDKFKEY MKGAMFEDIF DLCATQGTTS INLPLED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-58 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-58 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-58 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-58 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-58 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-58 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-58 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-58 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-58 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-58 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-58 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-58 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-58 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-58 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00205 | DAP | Transfer from AT1G54330 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021846735.1 | 0.0 | NAC transcription factor 32-like | ||||
TrEMBL | A0A0K9QWY1 | 0.0 | A0A0K9QWY1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690417.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 4e-93 | NAC domain containing protein 20 |