PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_130020_rokd.t1
Common NameSOVF_130020
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HSF
Protein Properties Length: 353aa    MW: 39389 Da    PI: 8.1315
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_130020_rokd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35251162102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+++++++sw e+ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+l
  Sp_130020_rokd.t1  25 FLTKTYHLVDDPATDHIVSWGEDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHL 107
                        9*****************************************************************99.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k+
  Sp_130020_rokd.t1 108 LCEIHRRKT 116
                        *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3818109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.0E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAVMVDNCEG LLLSLDNGKS VPAPFLTKTY HLVDDPATDH IVSWGEDDTT FIVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE IHRRKTGQQH  120
QLPTHLNFGH PSATSYLPNY FPSVSLSPPN SADDDHRDFD SSSGSPPSLS SPSASKSYAD  180
ALTSLSEENE RLRKSNTILI SELTHMRKLY NDIIYFVQNH VKPAVAPTNS GYPSASSLLL  240
SSAAVAAAAA ATTTSFSAHP NNFNQFIKKG INTNSNYNVG NFSQSYAAKR SNLRVLEDNE  300
SSSTSCNTKL FGVPIQSKKR LHPDQTVENN YKARMVLDKH DLGLNLMLPS PSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-222111626131Heat shock factor protein 1
5d5v_B3e-222111626131Heat shock factor protein 1
5d5v_D3e-222111626131Heat shock factor protein 1
5hdg_A2e-22211167112Heat shock factor protein 1
5hdn_A2e-22211167112Heat shock factor protein 1
5hdn_B2e-22211167112Heat shock factor protein 1
5hdn_C2e-22211167112Heat shock factor protein 1
5hdn_D2e-22211167112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838312.10.0heat stress transcription factor B-4-like
SwissprotQ9C6351e-107HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0K9QXH70.0A0A0K9QXH7_SPIOL; Uncharacterized protein
STRINGXP_010675615.11e-138(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-104heat shock transcription factor B4