PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_128970_nfkt.t1 | ||||||||
Common Name | SOVF_128970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 141aa MW: 16366.5 Da PI: 9.6718 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.6 | 5.9e-20 | 3 | 54 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++qle Le+ Fe++r+++ +++ +LA+ l L+ rqV vWFqNrRa++k Sp_128970_nfkt.t1 3 RRLTTKQLESLESSFEEERKLDPDRKMKLARDLALQPRQVAVWFQNRRARWK 54 579************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 110.5 | 1.2e-35 | 2 | 89 | 3 | 90 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 krrl+++q+++LE+sFeee+kL+p+rK++lar+L lqprqvavWFqnrRAR+k+k+l + y+aLk ++ +++e+++L++eve+L++ Sp_128970_nfkt.t1 2 KRRLTTKQLESLESSFEEERKLDPDRKMKLARDLALQPRQVAVWFQNRRARWKAKKLQHLYDALKLDFELVSKEKHKLQQEVERLKSI 89 9************************************************************************************964 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.459 | 1 | 56 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-17 | 2 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-13 | 2 | 60 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.7E-17 | 3 | 54 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-21 | 3 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.76E-8 | 21 | 57 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 31 | 54 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.4E-7 | 58 | 89 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MKRRLTTKQL ESLESSFEEE RKLDPDRKMK LARDLALQPR QVAVWFQNRR ARWKAKKLQH 60 LYDALKLDFE LVSKEKHKLQ QEVERLKSIM VMEEATKKQV YSSYTEASCE ETVESTSAAA 120 ANQYTGRNSG SNNGADDIVL N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 58 | ARWKAKKLQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021865529.1 | 2e-98 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 1e-39 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A0K9QXW8 | 4e-99 | A0A0K9QXW8_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010683925.1 | 6e-63 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 7e-30 | homeobox 51 |
Publications ? help Back to Top | |||
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