PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_127680_dkhu.t1
Common NameSOVF_127680
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HSF
Protein Properties Length: 386aa    MW: 43908.9 Da    PI: 4.9814
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_127680_dkhu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35461382103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+yei++d+ +++++sw+++g+sfvv+d+  f++ +Lp+ Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+l
  Sp_127680_dkhu.t1  46 FLTKTYEIIDDPITDNIVSWNKEGQSFVVWDPYAFSSGLLPRNFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFLRGQKQL 128
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i+r+k++
  Sp_127680_dkhu.t1 129 LKNIRRRKNS 138
                        *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.22E-3342135IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.5E-3742135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5842135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3046135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNPLYQQVKE EYPESGSSVT FSGEGSSNFP APQPREGLHE MGPPPFLTKT YEIIDDPITD  60
NIVSWNKEGQ SFVVWDPYAF SSGLLPRNFK HNNFSSFVRQ LNTYGFRKID PDKWEFANEG  120
FLRGQKQLLK NIRRRKNSSS NHLLFPQQEG IDPLVELGRF GLDGEVDRLR RDKQVLMMEL  180
VKIRQQQQNT RAFLQAMEQR LQATEMKQQQ MMNFLARAMQ NPTFLQQLVQ QKEKRKEIEE  240
EFSKKRRRPI DQGRKGHLQR GECSSSVPYT SVGNDGYIKS EPLEFGGSYG YDQYDNLGCV  300
SELEVLALEM QGHGRGGAEV GEDERGGGGG GLEQFEGGGD KELDDEFWEE LLSERFKAAS  360
SNQGGEDHED VNVLADRLGY LGSSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-254414018125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233247KRKEIEEEFSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843556.10.0heat stress transcription factor A-2c-like
SwissprotQ9LUH81e-121HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0K9QYB20.0A0A0K9QYB2_SPIOL; Uncharacterized protein
STRINGXP_010679125.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-106heat shock transcription factor A6B