PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_125480_okai.t1
Common NameSOVF_125480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TALE
Protein Properties Length: 528aa    MW: 59914.2 Da    PI: 6.7642
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_125480_okai.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.9e-084304671954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        F +  ++yp+ +e+  LA k gLt +qV++WF N R +
  Sp_125480_okai.t1 430 FDNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 467
                        555558******************************88 PP

2BELL74.61.5e-24310374772
               BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +k++++lsll++Vd+rY+++ +++++v+s+F+a+++l++ k++  +Al+++S+ +++L+++i++qi
  Sp_125480_okai.t1 310 SKRSQMLSLLQMVDDRYNRCLDEIHMVVSAFHAATELDP-KLHSCFALQTMSFFYKNLRERISNQI 374
                        799************************************.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.5E-23242372IPR006563POX domain
PfamPF075261.1E-23247371IPR006563POX domain
PROSITE profilePS5007110.948408471IPR001356Homeobox domain
CDDcd000861.08E-9411471No hitNo description
SMARTSM003891.0E-4411475IPR001356Homeobox domain
SuperFamilySSF466891.2E-14413478IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-24414476IPR009057Homeodomain-like
PfamPF059201.0E-14428467IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MESEPHMQLD FPICIPTALD GMPSQSLSES HLRTNFFQLN TQNDSLLGFP SVQGHSFKDI  60
HGDNKAVNYD GLLINRGSNF NFQELFLGGT SVVSGLNDAA NNSIISLQQE APSESLGAMF  120
SNGCSYASSS SIPSNLNSCG YDDGSFGYLN DRFPMQQELS WRASTSEFEP IRFHGSQDAS  180
NEWVVPSSAN ICTTHHHPYV TSRSHNELSL SLATSHSQTR IGSEHSSHRT KELSNNNNNR  240
SFQFPPVVSG SRYLSVLQQI LSDVSSYSFD GLDKTSFHSN NYFDPGSSSY KSSNEFHDND  300
GSFEVPSGSS KRSQMLSLLQ MVDDRYNRCL DEIHMVVSAF HAATELDPKL HSCFALQTMS  360
FFYKNLRERI SNQILAMGMD NKGSARDNSF DKSFIQKQWT IQQLKKKDQL WRPQRGLPER  420
SVSVLRAWMF DNFLHPYPKD AEKHLLAVKS GLTRSQVSNW FINARVRLWK PLVEDMCSEI  480
NRRKGSRQNE EETNNSNNSR SQLRIYDYDQ RDSAIEQHRE KGSVRSYW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835516.10.0homeobox protein ATH1 isoform X1
RefseqXP_021835517.10.0homeobox protein ATH1 isoform X1
RefseqXP_021835519.10.0homeobox protein ATH1 isoform X1
SwissprotP487315e-93ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A0K9QZ160.0A0A0K9QZ16_SPIOL; Uncharacterized protein
STRINGXP_010667130.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.18e-95homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]