PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_125480_okai.t1 | ||||||||
Common Name | SOVF_125480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TALE | ||||||||
Protein Properties | Length: 528aa MW: 59914.2 Da PI: 6.7642 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.2 | 2.9e-08 | 430 | 467 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 F + ++yp+ +e+ LA k gLt +qV++WF N R + Sp_125480_okai.t1 430 FDNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 467 555558******************************88 PP | |||||||
2 | BELL | 74.6 | 1.5e-24 | 310 | 374 | 7 | 72 |
BELL 7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +k++++lsll++Vd+rY+++ +++++v+s+F+a+++l++ k++ +Al+++S+ +++L+++i++qi Sp_125480_okai.t1 310 SKRSQMLSLLQMVDDRYNRCLDEIHMVVSAFHAATELDP-KLHSCFALQTMSFFYKNLRERISNQI 374 799************************************.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.5E-23 | 242 | 372 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-23 | 247 | 371 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 10.948 | 408 | 471 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.08E-9 | 411 | 471 | No hit | No description |
SMART | SM00389 | 1.0E-4 | 411 | 475 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-14 | 413 | 478 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.7E-24 | 414 | 476 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-14 | 428 | 467 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MESEPHMQLD FPICIPTALD GMPSQSLSES HLRTNFFQLN TQNDSLLGFP SVQGHSFKDI 60 HGDNKAVNYD GLLINRGSNF NFQELFLGGT SVVSGLNDAA NNSIISLQQE APSESLGAMF 120 SNGCSYASSS SIPSNLNSCG YDDGSFGYLN DRFPMQQELS WRASTSEFEP IRFHGSQDAS 180 NEWVVPSSAN ICTTHHHPYV TSRSHNELSL SLATSHSQTR IGSEHSSHRT KELSNNNNNR 240 SFQFPPVVSG SRYLSVLQQI LSDVSSYSFD GLDKTSFHSN NYFDPGSSSY KSSNEFHDND 300 GSFEVPSGSS KRSQMLSLLQ MVDDRYNRCL DEIHMVVSAF HAATELDPKL HSCFALQTMS 360 FFYKNLRERI SNQILAMGMD NKGSARDNSF DKSFIQKQWT IQQLKKKDQL WRPQRGLPER 420 SVSVLRAWMF DNFLHPYPKD AEKHLLAVKS GLTRSQVSNW FINARVRLWK PLVEDMCSEI 480 NRRKGSRQNE EETNNSNNSR SQLRIYDYDQ RDSAIEQHRE KGSVRSYW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021835516.1 | 0.0 | homeobox protein ATH1 isoform X1 | ||||
Refseq | XP_021835517.1 | 0.0 | homeobox protein ATH1 isoform X1 | ||||
Refseq | XP_021835519.1 | 0.0 | homeobox protein ATH1 isoform X1 | ||||
Swissprot | P48731 | 5e-93 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A0K9QZ16 | 0.0 | A0A0K9QZ16_SPIOL; Uncharacterized protein | ||||
STRING | XP_010667130.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 8e-95 | homeobox gene 1 |
Publications ? help Back to Top | |||
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