PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_125190_hnqh.t1
Common NameSOVF_125190
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 284aa    MW: 30975.3 Da    PI: 9.8694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_125190_hnqh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.2e-1586130347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E++l++++ ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  Sp_125190_hnqh.t1  86 PWTEDEHKLFLQGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 130
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.99879135IPR017930Myb domain
SuperFamilySSF466893.59E-1781136IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-1882133IPR006447Myb domain, plants
SMARTSM007177.9E-1183133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-1185130IPR009057Homeodomain-like
CDDcd001676.70E-1086131No hitNo description
PfamPF002493.8E-1286130IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAKEDATAGT DGGFMLFGVR VVTESMRKSV SLNNLSQYEH RLDSSSSNDV VPAVTAGYAS  60
ADDAVVANRS STTAAGVSRE RKRGVPWTED EHKLFLQGLQ KVGKGDWRGI SRNFVKTRTP  120
TQVASHAQKY FLRRSNLNRR RRRSSLFDIT TDTVTNQSND QQVVINKENN NGGSQSPQQQ  180
SSNSEISNLR FSSTAAPIYP LTTSFGHLPP QVVVDHEMKA VEGPVSASSS SKSMVDFDLN  240
QNDSSSLSLS LSLSMTASDL ANSRYPAFQL MQGFNNGDSI IRVA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855151.10.0transcription factor MYB1R1-like
SwissprotQ2V9B01e-56MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A0K9QZ300.0A0A0K9QZ30_SPIOL; Uncharacterized protein
STRINGXP_010678650.11e-106(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.23e-52MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]