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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sp_123140_ronx.t1 | ||||||||
| Common Name | SOVF_123140 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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| Family | C3H | ||||||||
| Protein Properties | Length: 1800aa MW: 197013 Da PI: 6.5957 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 21.5 | 4.2e-07 | 1779 | 1800 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
+ C+ f+++G+Ck G++Ck+ H+
Sp_123140_ronx.t1 1779 RVCK-FYESGYCKKGASCKYLHP 1800
7899.8999*************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57903 | 4.19E-8 | 60 | 134 | IPR011011 | Zinc finger, FYVE/PHD-type |
| Gene3D | G3DSA:3.30.40.10 | 6.0E-8 | 82 | 140 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| SMART | SM00249 | 1.0E-5 | 89 | 135 | IPR001965 | Zinc finger, PHD-type |
| CDD | cd15568 | 5.95E-18 | 89 | 134 | No hit | No description |
| PROSITE pattern | PS01359 | 0 | 90 | 150 | IPR019786 | Zinc finger, PHD-type, conserved site |
| SuperFamily | SSF47592 | 4.14E-21 | 306 | 384 | IPR003121 | SWIB/MDM2 domain |
| Gene3D | G3DSA:1.10.245.10 | 6.8E-26 | 307 | 385 | IPR003121 | SWIB/MDM2 domain |
| Pfam | PF02201 | 1.0E-14 | 309 | 382 | IPR003121 | SWIB/MDM2 domain |
| SMART | SM00151 | 3.2E-4 | 309 | 387 | IPR019835 | SWIB domain |
| SMART | SM00719 | 5.0E-37 | 442 | 552 | IPR004343 | Plus-3 domain |
| PROSITE profile | PS51360 | 26.333 | 442 | 575 | IPR004343 | Plus-3 domain |
| SuperFamily | SSF159042 | 7.45E-28 | 443 | 571 | IPR004343 | Plus-3 domain |
| Pfam | PF03126 | 7.7E-21 | 447 | 550 | IPR004343 | Plus-3 domain |
| SuperFamily | SSF55277 | 1.7E-16 | 777 | 836 | IPR003169 | GYF domain |
| PROSITE profile | PS50829 | 14.129 | 780 | 834 | IPR003169 | GYF domain |
| CDD | cd00072 | 1.45E-13 | 780 | 834 | No hit | No description |
| SMART | SM00444 | 1.4E-11 | 781 | 836 | IPR003169 | GYF domain |
| Pfam | PF02213 | 3.0E-10 | 782 | 822 | IPR003169 | GYF domain |
| Gene3D | G3DSA:3.30.1490.40 | 2.4E-17 | 782 | 837 | IPR003169 | GYF domain |
| PRINTS | PR01217 | 5.6E-11 | 1446 | 1462 | No hit | No description |
| PRINTS | PR01217 | 5.6E-11 | 1479 | 1491 | No hit | No description |
| PRINTS | PR01217 | 5.6E-11 | 1491 | 1512 | No hit | No description |
| PRINTS | PR01217 | 5.6E-11 | 1512 | 1528 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 1773 | 1799 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.906 | 1775 | 1800 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.7E-5 | 1778 | 1800 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.37E-5 | 1779 | 1799 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1800 aa Download sequence Send to blast |
MAETRLTRIT VQALPSVDKP VLSPASITVD RSHDIVQLPD SQLPEVPMEE VVVVKKRRGR 60 PPRNIGGAAA GGAPPIPVAK KSKKEDEDVC FICFDGGNLV LCDYRDCPKA YHPACVKRDE 120 SFFRRSIRWN CGWHLCNFCQ KNALFMCYTC PYSLCKRCVK QADVLCIRRN KGFCRTCMTT 180 IKLVENIPQE TKEQVQVDFD DTTSWEYLFK VYWIYLKEKE ALTLDELTRA TNPWKVSGLE 240 NNNFQQKRAE TCPSNVSELS SSNVQLETNN LKRRKTRRQQ QLLNLNSQNV DNSDGNKVTG 300 LHAAADWASK ELLDFVAHMK NGETSVLSQF DVQALLLDYI RKNNLRDPRQ KCQIICDRRL 360 EDLFGKERVG HFEMLKLLEY HFKEESRTNG VIRGAAVDPL ASQLENEGIS DDFQIPSRET 420 RRQSRKKAEE KGRQIKLDSY AAIDVHNINL IYLKRSLLEN LMVDAENFHD KVVGSVVRIR 480 ISSNDQKQDM HRLVRIIGTS KETEPYKIGV KTESFMLKIL NLNKIEDVAI GAISDQEFSE 540 DECRRLRQSI KLGLVERMTV GEIQEKAVSL QTMRVNDWLE TEIRRLNHLR DRASEMGHRK 600 ELRECVEKIE LLKAPEERLR RIQEIPDVHA DPRMDPSYGS DDDSGESDIK KQDGSMTPKY 660 SNSNARVELI SPVRSGDMLK DDRTIKPIKI SFANGERRRK NSAKFHVGKV ESTTRPLEPS 720 HNSEKVDAAS KIPEEDFNSR ADFVVVSGDR GVTKPGFVSD SVTTALSSRM LLVSDMNELE 780 KIWHYRDPSG KVQGPFCMLQ LRKWCSKDFF PTDLRVWKIN ESLDRSILLT DALKKQQSNE 840 PETEPDVEQL SCSQSYCGVE SDDRKVNPLE EFSSNSDAPF VAYNPNEEGS NKNLTDVNAS 900 SDAYENQGGI DQPSGFDIKA RLIESLFDTE EPSSTATPTG SSETMQVPLT FESSHPSTST 960 SKSGNPDLEC QVVVKSQPSS PNAGQPDSEI CWGTSNGFGT SDLPCVTQKS NPPDLNGLNL 1020 EIHVASDVSR DFDATCGTGS SPTKSSHLPN LTPKAENKDV NDHHDTINKN LVVSGGYEQD 1080 SGTDAVSGGI CLSMLPIAAV KVEKNDGLKP QTIENRQSIS SNVPGRDKEA IWSSTISAET 1140 DLSLLANNHL NTESMKAHAI ENNKHYNNTS SVPELVSGTS WNPISGGIVF SDPPKLESNT 1200 TSTTWTSSSI SGGMRFPDLP TTSLKLGNKS SEITNIRGQD SCINWSTSSS LVGEEVHLPD 1260 DVANEWGPYS TVVHAKPDAI ATPASQSCQL LNLHCDISSW QPIELSTLGD ESVSDLLSEV 1320 EAMESLRGMS SPTSRMNCGP DSIDSVDDDC FSPLGGLSPN LDPGKNNNMG FHIQQPSINH 1380 HHQQPHHGAF TVMRDLERTS SCILSTTTTT TTTGSVQVEA ADKQTIALMP FLDFVSKGPV 1440 SAVLLPPVGA AVSSSHSPPP PPPEASLPLP LFPPPSLSSL PQVSLPSPSP PPASLPLPPP 1500 PPSLQLPLPP PPPPPPPPPA SLPSPPPPPP PSLPSPPQSL PPPPASLPSP PPPPPPSLPS 1560 PPQSLPPPPP SLPSPPPPPP EEKPPSPPQK RPSALSLNSP SSPREEGEVD PASLSVHHPK 1620 PRHHRQPSPK TPTIKVAPSA DTRKQGSENT RTNWEPPGHP GGKLSGNTGS ILGTPNMHWH 1680 ISGPGIPAVN THWSTSVVSQ GTRGSSQTSP RYNNHSGGGG RHSGSKDRSN NHQHGGVDSG 1740 VSKSSRPNSW SRQSSFGGGG GGGGGPSRPL PPPPRGGPRV CKFYESGYCK KGASCKYLHP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 2naa_A | 1e-13 | 85 | 157 | 4 | 73 | Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific |
| 4gnd_A | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gnd_C | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gne_A | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gnf_A | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gng_A | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| 4gng_D | 1e-13 | 83 | 156 | 11 | 81 | Histone-lysine N-methyltransferase NSD3 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021850114.1 | 0.0 | zinc finger CCCH domain-containing protein 44 isoform X1 | ||||
| TrEMBL | A0A0K9QZQ0 | 0.0 | A0A0K9QZQ0_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010680076.1 | 0.0 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G16485.1 | 0.0 | nucleic acid binding;zinc ion binding;DNA binding | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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