PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_123070_uudr.t1
Common NameSOVF_123070
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARF
Protein Properties Length: 909aa    MW: 101265 Da    PI: 6.235
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_123070_uudr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.5e-24128229199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  Sp_123070_uudr.t1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI-- 215
                        99*****************************96555555..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  Sp_123070_uudr.t1 216 WNEKNQLLLGIRRA 229
                        8899999****997 PP
2Auxin_resp118.55.4e-39254337183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaast+s F+v++nPras+seFvv+++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Sp_123070_uudr.t1 254 AAHAASTNSRFTVFFNPRASPSEFVVSLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 337
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-49113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-21127228No hitNo description
SMARTSM010191.2E-24128230IPR003340B3 DNA binding domain
PfamPF023624.0E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492128230IPR003340B3 DNA binding domain
PfamPF065076.0E-34254337IPR010525Auxin response factor
PfamPF023091.6E-6765858IPR033389AUX/IAA domain
SuperFamilySSF542771.9E-6771847No hitNo description
PROSITE profilePS5174522.827773858IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MRLSSSGFPH QPEEGEKKVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPAQLICQLH DVTMHADVET DEVYAQMTLQ PLTLQEQKDV CLLPAELGTP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELMA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAST NSRFTVFFNP RASPSEFVVS LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPARWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPS GLPSFPVMKD GDMGLNSPLM WLQREVGDRC MPSLNFQGYG  420
LTPWMQPRLD PALLGLQPDI FQTMASAALQ DSRGLEKRPN QSLLQFQPNQ NMSCQPSSLT  480
NQLLQQAQSQ QTLVQNFHEN PTVAHNQVQG QLLQQQLQNC RAYGDHQQQQ QLPHFEQLRN  540
QFSDQQQIPK IVSKTPPFGS STQALPTSLE SISSSCPQQI FSNSIMNTAS DISPMHSLLN  600
SFSQDGGSRQ NLFSQDAGSR DSRQINIPNS NPLASSSPLL SKRVAAEPQH SSSTAPCSLP  660
QVEELGGPQT RISDLSSLLP PLPGREFSMY HGIGDPQNNM LFGVNVQQNE LANIRSNNNE  720
NDSLSMPFAC SSFSSAAGSD FPPASDMMTS SCVDESGFLQ SSENDDIANP PSRTFVKVQK  780
SGSLGRSLDI SKFSSYQELR SELAHLFGLE GQLEDPVRSG WQLVFVDREN DILLLGDDPW  840
QEFVNNVWYI KILSPQEVQQ MGKEGLDLPN SILRAKHQNS FNSCDDYTIQ QDLRHNNSNG  900
MASVTSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601635847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845293.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0K9R1E50.0A0A0K9R1E5_SPIOL; Auxin response factor
STRINGXP_010688801.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]