PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_122510_icgu.t1 | ||||||||
Common Name | SOVF_122510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34797.6 Da PI: 7.5293 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.5 | 2.3e-52 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelvv+yL++k++++++++ +i+e+d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ Sp_122510_icgu.t1 8 LPPGFRFHPTDEELVVHYLCRKCASQRISV-PIIAEIDLYKFDPWQLPGMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPI 98 79****************************.88***************6666689************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ g+kk Lvfy g+apkg+kt+W+mheyrl Sp_122510_icgu.t1 99 GK--PKTLGIKKALVFYAGKAPKGVKTNWIMHEYRL 132 98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-62 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.179 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MMSDELVLPP GFRFHPTDEE LVVHYLCRKC ASQRISVPII AEIDLYKFDP WQLPGMALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGTGYWK ATGADKPIGK PKTLGIKKAL VFYAGKAPKG 120 VKTNWIMHEY RLANVDRSAG KRTNLRLDDW VLCRIYNKKG VIEKDFIDQK PKPMSMPTSI 180 TQYPEFEDQK PVISTLGQTG PMGYNMTTTS PIPQPKNDLM HFDTSDSVPR CHTDTSGSNH 240 VASPEFMCDK EVQSDPKWNE LEKNLDFPSF NYMEPFPDDP FTSTAQFHND QMGNYQDIFM 300 LLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-83 | 5 | 164 | 12 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC460341 | 1e-164 | KC460341.1 Suaeda liaotungensis NAC-like protein 2 (NAC2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021863783.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-121 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0K9QZX0 | 0.0 | A0A0K9QZX0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010674351.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-123 | NAC family protein |