PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_121730_ewts.t1
Common NameSOVF_121730
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARF
Protein Properties Length: 695aa    MW: 76666.4 Da    PI: 6.6397
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_121730_ewts.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.5e-23120221199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g+ W++++iyr++++r++lt+GW+ Fv+a++L +gD++vF   
  Sp_121730_ewts.t1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGEPWKFRHIYRGTPRRHLLTTGWSTFVNAKKLIAGDSIVFL-- 207
                        89****************************997656666..69999********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++ l+v+++r+
  Sp_121730_ewts.t1 208 RAENGDLCVGIRRA 221
                        4488999****997 PP
2Auxin_resp107.71.3e-35289370383
         Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        + as++ +FevvY+Pra+t+eFvvk+ +v++al++ ++ GmRfkm fetedss++++ +Gt+++v+ +dp++W++S+Wr+L+
  Sp_121730_ewts.t1 289 TYASKGHPFEVVYYPRAGTPEFVVKAGHVKAALQICWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPMHWSDSPWRLLQ 370
                        67899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-29110223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-36114223IPR015300DNA-binding pseudobarrel domain
CDDcd100178.14E-21119220No hitNo description
PfamPF023621.8E-21120221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042120222IPR003340B3 DNA binding domain
SMARTSM010192.4E-21120222IPR003340B3 DNA binding domain
PfamPF065078.0E-31289370IPR010525Auxin response factor
PROSITE profilePS5174518.225609692IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MITFMDPKEK IKEADNCLDS QLWHACAGGM VQMPPVSSKV YYFVQGHIEH ANGNVDFRSF  60
PRIPSYVLCR VEDIRYLADQ ETDEVYAKIR LSPVTNEVDY SDDDIGVHGT EVQENKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGEPW KFRHIYRGTP  180
RRHLLTTGWS TFVNAKKLIA GDSIVFLRAE NGDLCVGIRR AKRGLGGGLD STSGWNPGST  240
VLNYGAFSAF LREDENRIGR NGNGVGLNSS GNPSAKGKVK LESVLESATY ASKGHPFEVV  300
YYPRAGTPEF VVKAGHVKAA LQICWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPMH  360
WSDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPPRKK FRLPHHPDFP  420
MDGQLPVPTF PGNFLGPSNP FGCLPDNSPA GMQGARHAQF GLSLSDLHMS KLQSGLFPGG  480
FPALDTTNTL PNRPSSSLSY HKPGSNENIS CLLTMGNTNQ SVKKSDVTKP HHFVLFGKPI  540
LTEQQMSLSR SVDTVSPVPT GNSSSEGNVD KAGNVSDGSG SGPNQDRSSM ERLPWLKDNR  600
PELDLELETG HCKVFMESED VGRTLELTLL NSYEELCTRL ANMFSIETSD MLNRVVYRDS  660
AGSSKQIGDE PFSEFAKRAK RLTILMDSSS DNTGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-811839151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863267.10.0auxin response factor 18-like
RefseqXP_021863268.10.0auxin response factor 18-like
RefseqXP_021863269.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0K9R0A20.0A0A0K9R0A2_SPIOL; Auxin response factor
STRINGXP_010684071.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]