PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_118630_cokg.t1 | ||||||||
Common Name | SOVF_118630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NF-YB | ||||||||
Protein Properties | Length: 257aa MW: 28209.3 Da PI: 3.7817 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 35 | 3.4e-11 | 14 | 106 | 6 | 92 |
NF-YB 6 rflPianvsrimkkvlPa......nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++lP + v r++k+ l + + + k+a e + fi ++++ a d c+ +r+ in++d+l al ++ f ++vepl++ l +++ Sp_118630_cokg.t1 14 EELPKTIVRRVVKEKLSQistdggDVTLHKEALIAFSESARIFIHYLSATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFK 105 57888888888888876511111133466777788899*************************************************99998 PP NF-YB 92 e 92 + Sp_118630_cokg.t1 106 K 106 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-22 | 11 | 105 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-8 | 15 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.49E-17 | 17 | 107 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGKEKATAVA TEAEELPKTI VRRVVKEKLS QISTDGGDVT LHKEALIAFS ESARIFIHYL 60 SATAHDICND SNRQIINAED VLNALEEVEF SEFVEPLRAA LDEFKKKAAG KRAGSAKAKE 120 ASKKRKTDEE TATKNVKAEV TATENGEEED TATENGKDEE TATENGEEED TATENGKDEE 180 TATENGEEED TGTENGEEEE TATENGEEEE TATENGEEED TATENGKEEE NEDEEDEEEE 240 ESENNDDNDD DDDSPDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y26_A | 1e-12 | 16 | 126 | 18 | 122 | DNA polymerase epsilon subunit D |
5y27_A | 1e-12 | 16 | 126 | 18 | 122 | DNA polymerase epsilon subunit D |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 125 | KKKAAGKRAGSAKAKEASKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021856796.1 | 1e-174 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A0K9R139 | 1e-172 | A0A0K9R139_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-36 | nuclear factor Y, subunit B11 |