PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_117630_eqqm.t1 | ||||||||
Common Name | SOVF_117630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 232aa MW: 26669.6 Da PI: 6.0335 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.5 | 7.9e-34 | 14 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk....rknratksgyWkatgk 88 lppGfrF+Ptdeel+ +yL+ k+ g +l++ +vi+ev+ +++Pw+Lp +++e y F+kr k+++g+ r+++at+sgyW++tg+ Sp_117630_eqqm.t1 14 LPPGFRFQPTDEELLFQYLRCKIFGLPLPA-SVIPEVHFSNLDPWELPG---DSKEERYVFTKRGAKHKNGDrnhtRATKATNSGYWEETGS 101 79****************************.99***************3...456799*********9977622225566788********* PP NAM 89 dkevlskkgel.....vglkktLvfykgrapk.gektdWvmheyrl 128 ++++ +++ +g+kktLvf g++p+ ++ tdW+mhey+l Sp_117630_eqqm.t1 102 EEHMSPPPNQNlgmpiKGVKKTLVFNIGKSPNyTSPTDWFMHEYSL 147 99999874433466669*********9988872568********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-40 | 8 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.626 | 14 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-21 | 15 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MKKHNFVIEG VSRLPPGFRF QPTDEELLFQ YLRCKIFGLP LPASVIPEVH FSNLDPWELP 60 GDSKEERYVF TKRGAKHKNG DRNHTRATKA TNSGYWEETG SEEHMSPPPN QNLGMPIKGV 120 KKTLVFNIGK SPNYTSPTDW FMHEYSLVYK NHQGTSKMED WVIYHVFLKQ RVEENDDAIM 180 LDYDNNNGHY NLTSNIDRYP CCSSSSSSSS NSFAEVSSYD SQSDEESSYN FL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-32 | 14 | 170 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-32 | 14 | 170 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-32 | 14 | 170 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-32 | 14 | 170 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-32 | 14 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-32 | 14 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-32 | 14 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-32 | 14 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-32 | 14 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-32 | 14 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-32 | 14 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-32 | 14 | 170 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-32 | 14 | 170 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-32 | 14 | 170 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021846193.1 | 1e-176 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A0K9R1H0 | 1e-174 | A0A0K9R1H0_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 7e-48 | NAC domain containing protein 41 |