PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_117510_ahuq.t1
Common NameSOVF_117510
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 530aa    MW: 58028.4 Da    PI: 6.5112
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_117510_ahuq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.51.5e-29189248159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++++tYeg+Hnh+
  Sp_117510_ahuq.t1 189 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCCDDMSILTTTYEGTHNHP 248
                        58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-30175250IPR003657WRKY domain
SuperFamilySSF1182901.31E-26182250IPR003657WRKY domain
PROSITE profilePS5081127.692184250IPR003657WRKY domain
SMARTSM007741.1E-34189249IPR003657WRKY domain
PfamPF031063.9E-26190248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
DNELESAKAE MSEVKQENER LKKMLERIEN DYRCLQTRFF DILQHQQSAS TISDDNNKSL  60
TIETQKEEEA QVSLCLGLQV NNINKRKKDD TITNNNSRSS SIVREDAKLM SEGLSLGRPP  120
SIDLSDKQGS ERSAEIDDTK EETWPPSKVL KTMEDSFKEE EEEEEATPQP NIIKRARVSV  180
RARCDTPTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPS CPVRKQVQRC CDDMSILTTT  240
YEGTHNHPLP VAATAMASTT SAAASILLSG SSTSEGGLTT CVPTMNTVNL NGLSYTLYNN  300
STNGQFNLPN SSAPTPPTIT LDLTATPSSV FNKRLISNTF LQTPSNNYSS TSLDFSSSNT  360
KSTLFPVAWS NNSYLNYGLF PSNKPPIGSI SFGKSSTYQP ISHLNSLDGI NNQAATSSSS  420
SQQLLTETLT KVLTSDPSFQ SAVAAAISSM VGNTHNNLIT NLNRTNSECL TTHNLKWVDQ  480
VQGISANSLP QNVKACAPTY LNKPTSSTSN SQPLFPFSLS KSSSPPNLRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20176250174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857529.10.0probable WRKY transcription factor 72
TrEMBLA0A0K9R1E70.0A0A0K9R1E7_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010693337.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-86WRKY DNA-binding protein 72