PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_116620_jzkx.t1

Common Name

SOVF_116620

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

FAR1

Protein Properties

Length: 426aa MW: 48783.4 Da PI: 8.1158

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_116620_jzkx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.8	2e-14	96	211	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.......................tekerrtraetrtgCkaklkv 68 ++Y+ Y+k+ GF v + + s ++++ ++ ++C + gk++ +k+ ++++++r++++++C a++ Sp_116620_jzkx.t1 96 NYYRIYGKQQGFGVIRPSAGFSrVQTKRKINVLWKCERAGKPNIISKSrrkkneqkdesqlgddvgtepiqVRTTKKSRKSKKCECPAMMYA 187 69**********9999988844667789999****9877777778899************8888999*********** PP FAR1 69 kkekdgkwevtkleleH.nHelap 91 + dg+w+v k++leH nH+l+p Sp_116620_jzkx.t1 188 GVNVDGEWVVRKVVLEHkNHSLTP 211 **************999975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-13	96	211	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MALNEGESGS VVGVVHDQST GMDGVINNDE GVHDVGPEDV GNMSESVTSC NQLSATERDE 60 CLTPTSAVHN GMYCHSQRLE APSVGMIFPT WEAADNYYRI YGKQQGFGVI RPSAGFSRVQ 120 TKRKINVLWK CERAGKPNII SKSRRKKNEQ KDESQLGDDV GTEPIQVRTT KKSRKSKKCE 180 CPAMMYAGVN VDGEWVVRKV VLEHKNHSLT PGTRLHTSQL NQAMPKLLLV SQTHDERNGL 240 NEKPNTELDM HNKNAGDKRL ITLGTQCKYI AMTTELKDII YDSFTGDEFE ERWKIVIDQY 300 ELADDTWLTR LYEERLMWVP IYNKDTFCAG MRNTQRVESM QSFFDDKLPN SLRNTVFLWK 360 RGWSQRWLLM LIVQCMVWQQ IFQSSKFSRN YTHTLNSWRF KRSAKGCCIV MVVESSSCQT 420 AYYCTI

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MALNEGESGS VVGVVHDQST GMDGVINNDE GVHDVGPEDV GNMSESVTSC NQLSATERDE  60
CLTPTSAVHN GMYCHSQRLE APSVGMIFPT WEAADNYYRI YGKQQGFGVI RPSAGFSRVQ  120
TKRKINVLWK CERAGKPNII SKSRRKKNEQ KDESQLGDDV GTEPIQVRTT KKSRKSKKCE  180
CPAMMYAGVN VDGEWVVRKV VLEHKNHSLT PGTRLHTSQL NQAMPKLLLV SQTHDERNGL  240
NEKPNTELDM HNKNAGDKRL ITLGTQCKYI AMTTELKDII YDSFTGDEFE ERWKIVIDQY  300
ELADDTWLTR LYEERLMWVP IYNKDTFCAG MRNTQRVESM QSFFDDKLPN SLRNTVFLWK  360
RGWSQRWLLM LIVQCMVWQQ IFQSSKFSRN YTHTLNSWRF KRSAKGCCIV MVVESSSCQT  420
AYYCTI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021843130.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A0K9R1T1	0.0	A0A0K9R1T1_SPIOL; Uncharacterized protein
STRING	XP_010671418.1	7e-68	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-14	FAR1 family protein