PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_109940_nnud.t1
Common NameSOVF_109940
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CPP
Protein Properties Length: 763aa    MW: 83394.6 Da    PI: 6.2171
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_109940_nnud.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.25.1e-16466504240
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk 
  Sp_109940_nnud.t1 466 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCSCLDCFNKP 504
                        689**********************************96 PP
2TCR50.93.1e-16551589139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Sp_109940_nnud.t1 551 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 589
                        589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-18465506IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.671466591IPR005172CRC domain
PfamPF036381.2E-11468503IPR005172CRC domain
SMARTSM011143.7E-17551592IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11553589IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MDTPERSQIG TPVSKFEESP FSNFINSLSP INPTKTIHVS QTFGSLSFTS PPSVFTSPHV  60
SLQKDNKFLR RHLVSDLLKA QLQSDGGNKD PIAEEDTSAE HQSDGLPDVQ VRGEEGSGSE  120
GSAKPLEDTS DCATELPREL KYDSGSPRCK AVTSSSSDTR CETNTSTALI QFVQESSIQG  180
SFQTELNSQE VKDGNEEEAC DWQSLISGSS DLFIFDSPNV TETSKGSLQK SQQQEETNVF  240
ASLLARFPTE QAYHLQNSLQ LGSTGCNEAL ETAQHSTQPT EETELQQTDQ PSENLEITSV  300
NEFFPTDSGE KPGKQPFSNL HRGLRRRCLT FEMPRMKRSI DGVLFSSSLS SLQNEDNPPS  360
SNRQPITPRV ESSRCIFPGI GLHLNALAAA SKDSGISNTE MLSPASQEHL INSLACLRND  420
EGPAENVIEN AEDPSQTSVF AATEDLNSNS PKKKRRKFET TGEGESCKRC NCKKSKCLKL  480
YCECFAAGVY CVEPCSCLDC FNKPIHEDTV LATRKQIESR NPLAFAPKVI RTSDSAQEIG  540
EDTTRTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSSMIG  600
TEVEMDKLQA SEKSILDRSL DIHGFQDDDD QNSEFAIPMT PSRLYRTSVP LATSSKGKPP  660
RSSLGTIGSS SSGLHSVDGP GRSTFLRTQS RIDKHFQSVS VDEIPAVLQN SSPPSISLKK  720
TLSPKSKRIS PPHHNNGQPL GLRSSRKLIL QSIPSFPSLS PRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1746858812120Protein lin-54 homolog
5fd3_B9e-1746858812120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451455KKKRR
2451456KKKRRK
3452456KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859215.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A0K9R5V10.0A0A0K9R5V1_SPIOL; Uncharacterized protein
STRINGXP_010694035.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-117TESMIN/TSO1-like CXC 2