PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_109860_aorj.t1
Common NameSOVF_109860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 298aa    MW: 33784.8 Da    PI: 4.6611
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_109860_aorj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.31.5e-1130105279
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                        Wt q  l L++    +e + +++ +  ++W  +++ + + g+ r+++qC+ kw++l  +y  +ke + +  s+s+s +
  Sp_109860_aorj.t1  30 WTIQDMLILVNEIAVVEGDWQNSLSTHQKWTIIAETCNALGVARNANQCRRKWQSLLADYNLVKECKLN--SGSESYW 105
                        9************************************************************99998776..4555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.2E-1030105No hitNo description
PROSITE profilePS500906.8183086IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-45586IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MWEADVGQQP PESTSGSRRT RSHLQEAAVW TIQDMLILVN EIAVVEGDWQ NSLSTHQKWT  60
IIAETCNALG VARNANQCRR KWQSLLADYN LVKECKLNSG SESYWSLGSE RRKEAGLPSE  120
FDKDLYKAME DFMKAPDRAD TDPECDPEAG EVDVLNVEES GPEPKRRRRR SIPQNRLSEE  180
RKQPKLEVEH VNPEPQNRLS EVRKQPKLEA EHVNPEPLVV EDTGQILAAK LMENTELIHA  240
ILAGNVTENV DDDDDLADVR NEESLKIEKV RRKADKLVAC FEDLAKNLEH LCGVVDKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169KRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843993.10.0trihelix transcription factor ASR3
TrEMBLA0A0K9R3V40.0A0A0K9R3V4_SPIOL; Uncharacterized protein
STRINGXP_010669503.11e-131(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.14e-52sequence-specific DNA binding transcription factors