PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_109500_rfdz.t1 | ||||||||
Common Name | SOVF_109500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 269aa MW: 31781.1 Da PI: 6.5125 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.5 | 9.4e-22 | 22 | 164 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk...kvkaeekew..yfFskrdkkyatgkrknra......... 77 p+GfrF+Pt+ +l++++L++k+++++ + +++ ik+vd+yk++P+ + + +++ ee+e+ yfF+k +k+ +++ k + Sp_109500_rfdz.t1 22 PVGFRFDPTEYQLLNYFLNHKISDQElPPYTQFlIKDVDLYKHHPSYFFQeilQFNIEEHEIrgYFFTKLKKAGINSSSKDNSyynrrvcdd 113 89************************53344556************995335555556665556*****99998876655554466777899 PP NAM 78 ..tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+W g+d ++++ +g ++g k L f + ++k + +W mhey++ Sp_109500_rfdz.t1 114 ygVEYGTWTGMGRD-PIFDIHGYQIGFDKYLKFSEVGDEK-STIEWKMHEYSF 164 8888********95.78887**************876666.689*******85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-22 | 12 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.636 | 21 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-14 | 22 | 163 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MVINNKDTMH LLDQQTMNFE IPVGFRFDPT EYQLLNYFLN HKISDQELPP YTQFLIKDVD 60 LYKHHPSYFF QEILQFNIEE HEIRGYFFTK LKKAGINSSS KDNSYYNRRV CDDYGVEYGT 120 WTGMGRDPIF DIHGYQIGFD KYLKFSEVGD EKSTIEWKMH EYSFHPSVMP VCSKEEYKDL 180 VICRVDMKMI GNAVKRRAST KNKGLNKVLF LFELKQIYDD NVKSIIPILP SSLPHVDNQA 240 IICIKKEEDE SYSEESVSNK KQKTDHRMN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849123.1 | 1e-113 | NAC domain-containing protein 7-like | ||||
TrEMBL | A0A0K9R3U2 | 0.0 | A0A0K9R3U2_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62700.1 | 1e-13 | Arabidopsis NAC domain containing protein 26 |