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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sp_108690_zzkh.t1 |
| Common Name | SOVF_108690 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 309aa MW: 34512.1 Da PI: 9.7727 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sp_108690_zzkh.t1 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 375 | 1.3e-114 | 8 | 309 | 26 | 301 |
GAGA_bind 26 lqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...salpvgvqvlsgtksidslqq. 113
+++ms++aerda+i+ern+a+ ek++a+ erdmaf+qrd+a++ern+al+erdn+l++l++++ns++ +++p+g+q+++g+k++++ qq
Sp_108690_zzkh.t1 8 KHMMSIMAERDAAIQERNMAINEKNKALEERDMAFMQRDTAMQERNEALMERDNALATLQYRQNSINggsNSCPPGCQISRGVKHMHHPQQh 99
489*************************************************************9999999*******************96 PP
GAGA_bind 114 lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.................. 186
+++ p++++ +++ re + +alp+++ a+e+ +++k+k +pk ++a +++kk++k+ +k k+e++d +
Sp_108690_zzkh.t1 100 IQHpPHVGEVSYDGREVQVPDALPLTSVAPESAKSRKVK------RPKDPNAASPNKKTSKTGRKAKREGDDLNkimfsksqewkgmqdmgd 185
45579********99999999999998888877777666......66666677777777777777777776633477777888999****** PP
GAGA_bind 187 .........skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklL 269
k+++k dl+ln+v++Dest+P+PvCsCtG+ rqCYkWGnGGWqS+CCtttiSvyPLP+++++r+aR++grKmS++af+klL
Sp_108690_zzkh.t1 186 hdgykqmgaPKSDWKGPDLGLNQVAFDESTMPPPVCSCTGVYRQCYKWGNGGWQSSCCTTTISVYPLPAVPNKRHARVGGRKMSGSAFSKLL 277
********99********************************************************************************** PP
GAGA_bind 270 ekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
++Laa+G+dls+pvDLkdhWAkHGtn+++tir
Sp_108690_zzkh.t1 278 SRLAADGHDLSTPVDLKDHWAKHGTNRYITIR 309
*******************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MQQPQSMKHM MSIMAERDAA IQERNMAINE KNKALEERDM AFMQRDTAMQ ERNEALMERD 60
NALATLQYRQ NSINGGSNSC PPGCQISRGV KHMHHPQQHI QHPPHVGEVS YDGREVQVPD 120
ALPLTSVAPE SAKSRKVKRP KDPNAASPNK KTSKTGRKAK REGDDLNKIM FSKSQEWKGM 180
QDMGDHDGYK QMGAPKSDWK GPDLGLNQVA FDESTMPPPV CSCTGVYRQC YKWGNGGWQS 240
SCCTTTISVY PLPAVPNKRH ARVGGRKMSG SAFSKLLSRL AADGHDLSTP VDLKDHWAKH 300
GTNRYITIR
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
