PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_107360_xjej.t1 | ||||||||
Common Name | SOVF_107360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | GRAS | ||||||||
Protein Properties | Length: 396aa MW: 43466.7 Da PI: 6.555 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 346.2 | 5.4e-106 | 13 | 380 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilk 92 +lLl+cA+++s+g+l+ a lL ++ el+sp g+p R+aa+f+ L++ l+ s + +++ + s ++ + +al+ ++ ++P++k Sp_107360_xjej.t1 13 LTLLLKCADHISAGNLTSAGDLLPEIFELSSPFGSPADRVAAFFAHSLHSYLLLhFLSPPPQPVKMLTLS-SQLRSFHSALQSYNSLTPFVK 103 579***********************************************99982223333333333333.346666678888********* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 fsh+taNqaI ea+eg++ vH+iD+di+qGlQWp L++ LasRp++ s+R+Tg+g+ s++ l++tg rLa+fA++lg+pf+f+++ k Sp_107360_xjej.t1 104 FSHFTANQAIFEALEGHDGVHVIDLDIMQGLQWPGLFHILASRPRKVNSVRVTGFGP----SSDLLSQTGARLAEFAASLGLPFRFTPIEGK 191 *********************************************************....9**************************9544 PP GRAS 185 ..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdslea 273 +l++ +l++L+ +E+++V++++ h+l+d s+s +L++++ ++P++v++veq++d +++sF+erf+eal+yysalfd+l + Sp_107360_xjej.t1 192 igNLSESQLSQLAAVANEVTVVHCMH--HNLYDISGSHVG----TLRVLNAVRPRLVTMVEQDIDVsQTTSFMERFVEALHYYSALFDALGE 277 45999999******************..9**999999999....**********************8999********************** PP GRAS 274 klpreseerikvErellgreivnvvace.gaerrer.hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 +l+++s +r++vE++l+g ei+n++a g++r++ +W + l ++GF+p +ls + a+qa+lll++++++gy++ ee+g+l lgWk Sp_107360_xjej.t1 278 GLGKDSVQRHVVEQQLFGSEIRNILAVGhGRKRINGdDGIITRWGDELIRVGFEPFSLSGSPAAQASLLLEMFPWKGYTMMEENGCLRLGWK 369 *************************986155566641455799************************************************* PP GRAS 364 drpLvsvSaWr 374 d pL+++SaW+ Sp_107360_xjej.t1 370 DLPLLTASAWQ 380 **********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 51.699 | 1 | 360 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-103 | 13 | 380 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MLTTAPTTSL HLLTLLLKCA DHISAGNLTS AGDLLPEIFE LSSPFGSPAD RVAAFFAHSL 60 HSYLLLHFLS PPPQPVKMLT LSSQLRSFHS ALQSYNSLTP FVKFSHFTAN QAIFEALEGH 120 DGVHVIDLDI MQGLQWPGLF HILASRPRKV NSVRVTGFGP SSDLLSQTGA RLAEFAASLG 180 LPFRFTPIEG KIGNLSESQL SQLAAVANEV TVVHCMHHNL YDISGSHVGT LRVLNAVRPR 240 LVTMVEQDID VSQTTSFMER FVEALHYYSA LFDALGEGLG KDSVQRHVVE QQLFGSEIRN 300 ILAVGHGRKR INGDDGIITR WGDELIRVGF EPFSLSGSPA AQASLLLEMF PWKGYTMMEE 360 NGCLRLGWKD LPLLTASAWQ PCDYSCVTSN GNILRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-119 | 18 | 381 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-119 | 18 | 381 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-119 | 18 | 381 | 24 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021855794.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 1e-150 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A0K9R686 | 0.0 | A0A0K9R686_SPIOL; Uncharacterized protein | ||||
STRING | XP_010669360.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-142 | GRAS family protein |
Publications ? help Back to Top | |||
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