PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_105870_tkaa.t1

Common Name

SOVF_105870

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

TCP

Protein Properties

Length: 284aa MW: 29486.8 Da PI: 10.2522

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_105870_tkaa.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.6	2.2e-38	45	141	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg... 88 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s s ++ + g Sp_105870_tkaa.t1 45 AVKKAPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPHSLASHHHLRTVGltt 136 789*************************************************************9999988844444444444322222332 PP TCP 89 ....k 89 k Sp_105870_tkaa.t1 137 sadnK 141 22220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-32	51	145	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	51	105	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MSAIDGATNG GGGGGALIEL PHSLSSQQQQ QQRQATTATT TTALAVKKAP AKDRHSKVDG 60 RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTSSP 120 HSLASHHHLR TVGLTTSADN KVSPSPSPTP FLLGKRLRTT AEENEAQNGG VEKEDVVTTA 180 SLGPTAGYWI PTRPDFWSFA TPDMVVGPTS ALGQQAAAAA AMAGRFLSHQ QQQQVTLGEA 240 SRVGNYMSIG QGHHLNLLAS LSGAPASGGG AGGSSGGRRD DDPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021841964.1	0.0	transcription factor TCP21-like
Swissprot	Q9FMX2	5e-64	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0K9R6R1	0.0	A0A0K9R6R1_SPIOL; Uncharacterized protein
STRING	XP_010688658.1	1e-103	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-43	TCP family protein