PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_105270_kyxt.t1

Common Name

SOVF_105270

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

FAR1

Protein Properties

Length: 419aa MW: 49003.4 Da PI: 5.1828

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_105270_kyxt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.5	1.7e-21	132	215	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + +r+etrtgC a++++++ ++++w++++ +leHnH + Sp_105270_kyxt.t1 132 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTFKEAS-----CRRKETRTGCLAMMRLRLVETNRWRIDEAKLEHNHLF 215 69*************************************998777.....999******************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.4E-19	132	215	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MEDQEDNGDE LFENEGHDHE SEGHHGFGIE SDDHENDGEQ FLIDANIHEE SEQGLELEGE 60 DHCSDSQQFL EVRVHNAENE TFHMLDLHAN DEVHNLGNNT MGVDDEDGLS KERYYHPPTV 120 GMEFESYDDA YNYYNCYAKE LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTFKEASCR 180 RKETRTGCLA MMRLRLVETN RWRIDEAKLE HNHLFDPERV QNSKSHKKME VSLKRDLEPT 240 VDVEVRTIKL YRTSVVDAAS SWNLTSRGGD KDNHIQPRFL KLKSGDSQAM HNYFCQKQLT 300 RHPPQTIVTD RFKAIQIAIS EVFPRAHHRF WLPLVMQSII LNLGQLQEFE AFQSILSRTV 360 YNSLKIDEFE TSWDNMIDRF GIRDHEWLRV WYEDREKWAP AYQKDTFLAG LFAVQTGIR

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MEDQEDNGDE LFENEGHDHE SEGHHGFGIE SDDHENDGEQ FLIDANIHEE SEQGLELEGE  60
DHCSDSQQFL EVRVHNAENE TFHMLDLHAN DEVHNLGNNT MGVDDEDGLS KERYYHPPTV  120
GMEFESYDDA YNYYNCYAKE LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTFKEASCR  180
RKETRTGCLA MMRLRLVETN RWRIDEAKLE HNHLFDPERV QNSKSHKKME VSLKRDLEPT  240
VDVEVRTIKL YRTSVVDAAS SWNLTSRGGD KDNHIQPRFL KLKSGDSQAM HNYFCQKQLT  300
RHPPQTIVTD RFKAIQIAIS EVFPRAHHRF WLPLVMQSII LNLGQLQEFE AFQSILSRTV  360
YNSLKIDEFE TSWDNMIDRF GIRDHEWLRV WYEDREKWAP AYQKDTFLAG LFAVQTGIR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021844395.1	0.0	protein FAR1-RELATED SEQUENCE 8-like isoform X1
Refseq	XP_021844396.1	0.0	protein FAR1-RELATED SEQUENCE 8-like isoform X1
Refseq	XP_021844397.1	0.0	protein FAR1-RELATED SEQUENCE 8-like isoform X1
Refseq	XP_021844398.1	0.0	protein FAR1-RELATED SEQUENCE 8-like isoform X1
Refseq	XP_021844399.1	0.0	protein FAR1-RELATED SEQUENCE 8-like isoform X2
Refseq	XP_021844400.1	0.0	protein FAR1-RELATED SEQUENCE 8-like isoform X3
Swissprot	Q9S793	4e-60	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A0K9R7E0	0.0	A0A0K9R7E0_SPIOL; Uncharacterized protein
STRING	XP_010691106.1	1e-172	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	5e-53	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]