PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_104820_frca.t1

Common Name

SOVF_104820

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bZIP

Protein Properties

Length: 344aa MW: 37725 Da PI: 9.3292

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_104820_frca.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.6	8.8e-16	274	322	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+ ++ e +k Sp_104820_frca.t1 274 RRQKRMIKNRESAARSRARKQAYTHELENKVSRLEEENERLR-RMREVEK 322 79***************************************9.5555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-13	267	316	No hit	No description
SMART	SM00338	1.3E-14	270	338	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.484	272	316	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-12	274	316	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-10	274	319	No hit	No description
CDD	cd14707	2.39E-22	274	319	No hit	No description
PROSITE pattern	PS00036	0	277	292	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MGTQTMGSQG GVGDSSVPKP PSLSRQGSLY SLTLDEVQNQ LGNLGKPLSS MNLDELLRNV 60 WTVEANQTVG GSGNNNNNVV DNGAQNHNQG ANVEASLNRQ SSFNLSRDLS KKTVDEVWRE 120 IQQVKERNPE RQNTLGEMTL EDFLVQAGVV LDAVGNGNGN GNGNGNDSSS GGQNNLVGVD 180 PNSGRHLNVP QQAQWMPYQL LPQQQQHSMM TMFMPGHHVP QPIAVSGGAL SDTAYNEAQL 240 AVTTAPLMGT LPDTQAIGRK RLATGEVVEK TVERRQKRMI KNRESAARSR ARKQAYTHEL 300 ENKVSRLEEE NERLRRMREV EKALPSVPPP QPKYQLRRTS SSPF

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MGTQTMGSQG GVGDSSVPKP PSLSRQGSLY SLTLDEVQNQ LGNLGKPLSS MNLDELLRNV  60
WTVEANQTVG GSGNNNNNVV DNGAQNHNQG ANVEASLNRQ SSFNLSRDLS KKTVDEVWRE  120
IQQVKERNPE RQNTLGEMTL EDFLVQAGVV LDAVGNGNGN GNGNGNDSSS GGQNNLVGVD  180
PNSGRHLNVP QQAQWMPYQL LPQQQQHSMM TMFMPGHHVP QPIAVSGGAL SDTAYNEAQL  240
AVTTAPLMGT LPDTQAIGRK RLATGEVVEK TVERRQKRMI KNRESAARSR ARKQAYTHEL  300
ENKVSRLEEE NERLRRMREV EKALPSVPPP QPKYQLRRTS SSPF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021854251.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	9e-98	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0K9R5G7	0.0	A0A0K9R5G7_SPIOL; Uncharacterized protein
STRING	XP_010673247.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-83	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]