PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_104120_otma.t1
Common NameSOVF_104120
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 287aa    MW: 32428.7 Da    PI: 7.8149
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_104120_otma.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.32.9e-27131651128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee................vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyat 70 
                        lppG+rF P++e+l+++yL++k ++++l+l++                +ike+++y+++P +Lp+       +++++++wy +++r +   +
  Sp_104120_otma.t1  13 LPPGCRFYPSEEQLLSYYLRRKNHHDSLPLQSsssnstpstsnadfydAIKEINLYNFNPFELPEltcfsfGYRGRKRHWYCYTERVNGGME 104
                        79************************96664466777888888888879***************65788775566888********999999 PP

                NAM  71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        +++ +r +  g+Wk +g+ ++v+ + ++   g +k ++fy  k + +++++tdW+m ey+l
  Sp_104120_otma.t1 105 EREIRRRAGFGFWKRKGRVRDVMGNgGNVILGRRKCFIFYleKLSGRTAVRTDWFMYEYAL 165
                        989999999***************9445558*********7655888899*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-3011181IPR003441NAC domain
PROSITE profilePS5100533.9113181IPR003441NAC domain
PfamPF023653.3E-1614165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGDPKAPSSP SALPPGCRFY PSEEQLLSYY LRRKNHHDSL PLQSSSSNST PSTSNADFYD  60
AIKEINLYNF NPFELPELTC FSFGYRGRKR HWYCYTERVN GGMEEREIRR RAGFGFWKRK  120
GRVRDVMGNG GNVILGRRKC FIFYLEKLSG RTAVRTDWFM YEYALIDSVK ASFVVCRVFV  180
KSRAPKSISE HALSSCAEAS ITTVRHIGIQ HDGSTLSALD GDKAHGCYYL NGKIAGQPTD  240
LIEETELNIP VKLPDHVDSA DLLVNSLTPR HLVSILEGDF IELDDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-17718211166NO APICAL MERISTEM PROTEIN
1ut4_B1e-17718211166NO APICAL MERISTEM PROTEIN
1ut7_A1e-17718211166NO APICAL MERISTEM PROTEIN
1ut7_B1e-17718211166NO APICAL MERISTEM PROTEIN
4dul_A1e-17718211166NAC domain-containing protein 19
4dul_B1e-17718211166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838298.10.0NAC transcription factor 29-like isoform X1
TrEMBLA0A0K9R5M30.0A0A0K9R5M3_SPIOL; Uncharacterized protein
STRINGXP_010688772.11e-139(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-19NAC family protein