PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_103700_yhhy.t1
Common NameSOVF_103700
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 406aa    MW: 45814.1 Da    PI: 8.203
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_103700_yhhy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-16108153147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
  Sp_103700_yhhy.t1 108 RGHWRPAEDSKLKELVAIYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 153
                        899*****************************.***********996 PP
2Myb_DNA-binding56.18.6e-18160203146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Sp_103700_yhhy.t1 160 RRAFTEEEEERLMQAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 203
                        678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.296103154IPR017930Myb domain
SMARTSM007172.5E-14107156IPR001005SANT/Myb domain
SuperFamilySSF466891.98E-28108201IPR009057Homeodomain-like
PfamPF002494.6E-16108153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-26109161IPR009057Homeodomain-like
CDDcd001672.38E-13111152No hitNo description
PROSITE profilePS5129427.255155209IPR017930Myb domain
SMARTSM007172.4E-14159207IPR001005SANT/Myb domain
PfamPF002491.9E-14160202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-21162208IPR009057Homeodomain-like
CDDcd001679.32E-12162202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGMSAFPDLT SLSLTKTASF GAMPAAASEE RPQNRGFPFL GSFTSRQQEV IEGKVCDFVE  60
KHGVSVSVSN MDLNSNASCK DENFYENNNN NDNSNKVGGS KESKACARGH WRPAEDSKLK  120
ELVAIYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRVYGN  180
KWAMIARLFP GRTDNAVKNH WHVIMARKYR EQSSAYRRRR NLMAHHQQYQ QHQQQQPSSS  240
SSFPLNNQHD FNNGRRSPSS SSMEDDEQPP SSYNTCYNGG INIKNNNNNN NNQCSSFPNN  300
GGSNGFCGHP QSPLDFFSGP NNNNMVSMFS QSSCLDRPIQ MQIQQQESYY YYYYNNNNSS  360
SLISLPQTDP YSLSSSQSPS FQAARSDDNP NSSSPPFIDF LGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-351082087107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842779.10.0myb-like protein AA
TrEMBLA0A0K9R5Q70.0A0A0K9R5Q7_SPIOL; Uncharacterized protein
STRINGXP_010683161.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-78myb domain protein 105