PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_103210_nzsd.t1

Common Name

SOVF_103210

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 296aa MW: 31061.6 Da PI: 5.2441

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_103210_nzsd.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	174	221	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sp_103210_nzsd.t1 174 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 221 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.31E-10	168	225	No hit	No description
SuperFamily	SSF47459	4.45E-17	168	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-17	170	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-7	174	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-10	176	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDPPLISEGS FSTANPSLAE IWPFNGGGGD SDGDGMLGLR MGSGGGFMSS LLDGLLSNGV 60 VGAMNRDGSI EESTVTDQSG SLGGGRGGGG GRKRREIISE DESSKIVSTT SSGNELKESN 120 GKRTKTPGSE DENGCSKVGG ETGSAGGNKN ADKSAEQLKD YIHVRARRGQ ATDSHSLAER 180 ARREKISERM KILQDLVPGC NKVIGKALVL DEIINYVQSL QRQVEFLSMK LEAVNSGMIP 240 SIGGFHSKEV NQLGMPSFDP SMMLAQAARE LAAAAGGGPQ PEWLHMQLGG NFERTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	90	GGRGGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855140.1	0.0	transcription factor bHLH79
Swissprot	Q9LV17	6e-80	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A0K9R5V2	0.0	A0A0K9R5V2_SPIOL; Uncharacterized protein
STRING	XP_010678640.1	1e-168	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	4e-71	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]