PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_103190_meji.t1 | ||||||||
Common Name | SOVF_103190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 415aa MW: 46393.4 Da PI: 5.1535 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.5 | 1.3e-53 | 36 | 163 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l+pGfrFhPtd+elv++yLk+k+ gk++++ ++i+e+diyk+ePwdLp +k+k++++ewyfF +d+ky +g+r nrat +gyWkatg+d+ Sp_103190_meji.t1 36 LAPGFRFHPTDQELVSYYLKRKICGKPIRF-DAISETDIYKSEPWDLPdlSKLKSRDNEWYFFGVQDRKYVNGSRVNRATGKGYWKATGNDR 126 579**************************9.99**************965599999************************************ PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ + ++vg+kktLvfy+grap g++t+Wvmheyrl Sp_103190_meji.t1 127 PIIH-NFRTVGMKKTLVFYSGRAPCGKRTNWVMHEYRL 163 ****.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-61 | 34 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.37 | 36 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-27 | 38 | 163 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence Send to blast |
MGTEPPPPLL PPPQPPSPQP LMLLPPPPPT ETATSLAPGF RFHPTDQELV SYYLKRKICG 60 KPIRFDAISE TDIYKSEPWD LPDLSKLKSR DNEWYFFGVQ DRKYVNGSRV NRATGKGYWK 120 ATGNDRPIIH NFRTVGMKKT LVFYSGRAPC GKRTNWVMHE YRLTDDELAK SGVVLDAYLL 180 CKILKKSGPG FKPGEQYGPF VEEEWEKDVS TLVPGEEGDD ETAVNDDARV EDSILSMNNS 240 ESGPISSCGL STEVQEIPPL CKVERTEEGP IACTVDPEPL SLGPNKRQRR SEFDSCHSNG 300 ASDISTTITQ GPCSSSTGTT NFSSGRLDFP LLESVSVEPK QRPSPPTNVI DINVPPSYLK 360 LFEELRNEIY RTSIEKESLK IEVMSARTMI NILQTKIDHL TKENEELKKS NSRDV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-49 | 30 | 187 | 9 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021864947.1 | 0.0 | NAC transcription factor 29-like | ||||
TrEMBL | A0A0K9R5V8 | 0.0 | A0A0K9R5V8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694507.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10490.2 | 7e-98 | NAC domain containing protein 52 |