PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_101360_cwuq.t1

Common Name

SOVF_101360

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NAC

Protein Properties

Length: 271aa MW: 30695.9 Da PI: 8.475

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_101360_cwuq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.6	2.5e-32	31	171	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 lp+G++F+Ptd e++ +L++kv+++ l + +i+ +i++++P +Lp v+++ +fF++ +k+y+tg+rk+r+++ Sp_101360_cwuq.t1 31 LPAGVKFDPTDPEIL-GHLEAKVKSDLsrlhplL---DefipTIEGEnGICYTHPDKLP-GVTKDGVMRHFFHCPSKAYTTGTRKRRKVHtd 117 799*********9.89*99886665442...233333665557******.455556678**************74445 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk++++l+ +g ++g kk+Lv+y gr++k+ekt+Wvmh+y++ Sp_101360_cwuq.t1 118 edggETRWHKTGKTRPILV-NGGVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHI 171 6655778********.8999******66589************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-37	27	190	IPR003441	NAC domain
PROSITE profile	PS51005	31.93	31	190	IPR003441	NAC domain
Pfam	PF02365	1.2E-14	32	171	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MNPLRTIACP SCGHHFSLQD QAGGINDLPG LPAGVKFDPT DPEILGHLEA KVKSDLSRLH 60 PLLDEFIPTI EGENGICYTH PDKLPGVTKD GVMRHFFHCP SKAYTTGTRK RRKVHTDEDG 120 GETRWHKTGK TRPILVNGGV KGFKKILVLY TNYGRQRKPE KTNWVMHQYH IGPNEEERDG 180 EFVLSKVFYQ TQPRQCGSTI KELPIDNEHP PLIKPPLNYY QPSYISYEHH PHHHNVVVAE 240 QNRESPPQLI PNLILQGDVP SLFSIATTRK S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021861296.1	0.0	NAC domain-containing protein 73-like
Swissprot	O49459	1e-110	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0K9R6G2	0.0	A0A0K9R6G2_SPIOL; Uncharacterized protein
STRING	XP_010686394.1	1e-175	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-112	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]