PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_101030_adka.t1

Common Name

SOVF_101030

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

BBR-BPC

Protein Properties

Length: 241aa MW: 27646.6 Da PI: 9.3526

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_101030_adka.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	35	4.6e-11	11	101	19	105
GAGA_bind 19 slkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgt 105 + + ++ +l+ +iaerda+i+e + al ekk a+ er++a qr+ a er++a++er+n+++ + s + + p+++++ls++ Sp_101030_adka.t1 11 QTALIMNRNLVNMIAERDAAIEEMKRALLEKKRAFEEREIAISQRNFAYRERDEAIMERNNAYALQNCILSSGVecdnNYVPQEINALSES 101 33445899******************************************************98776665555445545556666666555 PP
2	GAGA_bind	239.5	2.5e-73	100	241	156	301
GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPv 246 ++++k+++ kk+k+ +k +k ++d ++k+e++ +++ln v++D+s +P P CsCtG+ rqCYkWGnGGWqSaCCttt+SvyPLP Sp_101030_adka.t1 100 ESNNKSPQPKKTKE-----RKPREKRTCDeLKVKKEWDGKKMGLNRVDYDDSVMPSPGCSCTGVFRQCYKWGNGGWQSACCTTTVSVYPLPP 186 23333333333333.....2223333333378********************************************************** PP GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++++r aRi+grKmS +af+klL+ La eG+dls pvDLk+ W kHGtn+++ti+ Sp_101030_adka.t1 187 VPNKRYARIGGRKMSASAFSKLLSELAMEGFDLSVPVDLKNRWSKHGTNRYITIK 241 ****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	9.4E-80	2	241	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	8.5E-70	101	241	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MMAYQHEVKE QTALIMNRNL VNMIAERDAA IEEMKRALLE KKRAFEEREI AISQRNFAYR 60 ERDEAIMERN NAYALQNCIL SSGVECDNNY VPQEINALSE SNNKSPQPKK TKERKPREKR 120 TCDELKVKKE WDGKKMGLNR VDYDDSVMPS PGCSCTGVFR QCYKWGNGGW QSACCTTTVS 180 VYPLPPVPNK RYARIGGRKM SASAFSKLLS ELAMEGFDLS VPVDLKNRWS KHGTNRYITI 240 K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021852931.1	0.0	protein BASIC PENTACYSTEINE4-like isoform X2
Swissprot	Q8S8C6	1e-78	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A0K9R6K0	0.0	A0A0K9R6K0_SPIOL; Uncharacterized protein
STRING	XP_010667727.1	1e-118	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	6e-79	basic pentacysteine 4