PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_099340_ijoz.t1

Common Name

SOVF_099340

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 356aa MW: 39375.2 Da PI: 4.5796

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_099340_ijoz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.5e-11	189	232	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Sp_099340_ijoz.t1 189 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 232 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.453	183	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-15	186	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.6E-12	189	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	189	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.7E-15	190	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.87E-5	190	236	No hit	No description
CDD	cd04873	3.94E-4	285	326	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEMNEDGFLE ELLALRREAW DTNPSSSTVD HQINGFFSST TWPFNGLDST SLPNTSTTSY 60 DSFTSSIDQQ PPPPPPPSTA VSNTLDCSSF FANPPPGPFD PTFPGPETDY SLSSALMEDD 120 NINNNNNNSV SCKAEHCMSS GELEFEIPSP SPPLAAAGFN IGLCMEKRIC SGNGKSKAKK 180 VEGQPSKNLM AERRRRKRLN DRLSMLRSVV PKISKMDRTS ILGDTIDYMK ELLERINNLQ 240 EEIDVGSNNN NNQFNVMSIF KDVKPNEVLV RNSPKFDVER RNLDTRVEIC CAGKPGLLLS 300 TVTTLEALGL QVQQCVISCF NDFSLQASCC EEMQQKLLIN SEEIKQALFR NAGYGG

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEMNEDGFLE ELLALRREAW DTNPSSSTVD HQINGFFSST TWPFNGLDST SLPNTSTTSY  60
DSFTSSIDQQ PPPPPPPSTA VSNTLDCSSF FANPPPGPFD PTFPGPETDY SLSSALMEDD  120
NINNNNNNSV SCKAEHCMSS GELEFEIPSP SPPLAAAGFN IGLCMEKRIC SGNGKSKAKK  180
VEGQPSKNLM AERRRRKRLN DRLSMLRSVV PKISKMDRTS ILGDTIDYMK ELLERINNLQ  240
EEIDVGSNNN NNQFNVMSIF KDVKPNEVLV RNSPKFDVER RNLDTRVEIC CAGKPGLLLS  300
TVTTLEALGL QVQQCVISCF NDFSLQASCC EEMQQKLLIN SEEIKQALFR NAGYGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	198	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021863195.1	0.0	transcription factor bHLH93
Swissprot	Q9LSL1	4e-83	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A0K9R735	0.0	A0A0K9R735_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010692682.1	1e-161	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-83	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]