PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_098580_jwkj.t1 | ||||||||
Common Name | SOVF_098580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TCP | ||||||||
Protein Properties | Length: 243aa MW: 27171.2 Da PI: 6.1495 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.4 | 2.3e-29 | 6 | 99 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......k 89 a+k +++ ki+T++g++dRR+Rlsa++a++fFd+qd+LG+d++ ++++WL+ +ak +i++l ++s +++s+ ++ +s s+s + + + Sp_098580_jwkj.t1 6 AKKPRSNNKIYTARGPKDRRIRLSADIAIQFFDVQDRLGYDRATEAVDWLISKAKGSIDKLFDSSVQQQSKHLTHLESMSDSGVQVDflpeimS 99 789999**********************************************************888886663333333333111213334332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 25.306 | 7 | 66 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.1E-25 | 12 | 112 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MRTSSAKKPR SNNKIYTARG PKDRRIRLSA DIAIQFFDVQ DRLGYDRATE AVDWLISKAK 60 GSIDKLFDSS VQQQSKHLTH LESMSDSGVQ VDFLPEIMSS RKDYGTPNFH HSCDNNNNIS 120 AYNCTMENSM FLPCIQMENI SENQGFAHPT FSSYLGLEDS SRPCFQQIEE IKGQNARMVM 180 FNSKSNSRNG EHPFISDSLP LFLQASNNDS SLCHSPTSDP ELNLCLPGNC TSAISDSGQG 240 TFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-17 | 13 | 66 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-17 | 13 | 66 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021846008.1 | 0.0 | transcription factor TCP24-like | ||||
Refseq | XP_021846009.1 | 0.0 | transcription factor TCP24-like | ||||
TrEMBL | A0A0K9R799 | 0.0 | A0A0K9R799_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-23 | TCP domain protein 10 |