PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_098500_tquf.t1
Common NameSOVF_098500
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TALE
Protein Properties Length: 397aa    MW: 44137.9 Da    PI: 6.4337
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_098500_tquf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.69.1e-083463792154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp++e++++L +++gL+ +q+ +WF N+R +
  Sp_098500_tquf.t1 346 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 379
                        469*****************************87 PP
2ELK29.41.8e-10300321122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELKh+L+++Y+ +++++++E++
  Sp_098500_tquf.t1 300 ELKHELKQGYKDKIVDIREEIL 321
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.1E-18133177IPR005540KNOX1
PfamPF037902.5E-16135176IPR005540KNOX1
SMARTSM012561.2E-28188243IPR005541KNOX2
PfamPF037912.5E-21192242IPR005541KNOX2
PROSITE profilePS512139.969300320IPR005539ELK domain
SMARTSM011885.1E-4300321IPR005539ELK domain
PfamPF037891.3E-5300321IPR005539ELK domain
PROSITE profilePS5007111.726320383IPR001356Homeobox domain
SuperFamilySSF466893.51E-16322386IPR009057Homeodomain-like
SMARTSM003892.4E-11322387IPR001356Homeobox domain
CDDcd000864.15E-12323384No hitNo description
Gene3DG3DSA:1.10.10.603.2E-25327384IPR009057Homeodomain-like
PfamPF059201.1E-17340379IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAYHHNHHLS QAEMAAQFAG EQTHSPNHHQ QQLQHHQRQL QHHQPNWLTS AILGSSAGAG  60
EGGSNFFKIH SVDDSGAMSA IPSQPGELTH NEEAGKPEIG DGEVSGSGGN SGGGDRGGEQ  120
QQQQQQQVNW QNAKFKAEVL GHPLYEQLLS AHVACLRIAT PVDQLPRIDA QLAQSQNVVA  180
KYSALGNGHN LVGDDKELDQ FMTHYVLLLC SFKEQLQQHV RVHAMEAVMA CWEIEQSLQS  240
LTGVSPGEGT GATMSDDEDD PIDSESNLFD GGLDGGDTMG FGPLIPTESE RSLMERVRQE  300
LKHELKQGYK DKIVDIREEI LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ  360
ETGLQLKQIN NWFINQRKRN WHSNPSSSTA LKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12323387872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376396RKRNWHSNPSSSTALKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862211.10.0homeobox protein knotted-1-like 2
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0K9R9E20.0A0A0K9R9E2_SPIOL; Uncharacterized protein
STRINGXP_010665744.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-162KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]