PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_098330_tssz.t1
Common NameSOVF_098330
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25832.4 Da    PI: 5.1051
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_098330_tssz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krie+ks rqvtfskRr g++KKA ELS+LCd++vav++fs++g+lye+ 
  Sp_098330_tssz.t1  9 KRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSHRGRLYEFV 58
                       79***********************************************7 PP
2K-box54.84e-191061743199
              K-box  31 LqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++  R   G ++e+Lsl++ +qLe+qL+++l + R++K +l+le++ +l++kek+l +en +L+ +++
  Sp_098330_tssz.t1 106 VKTVERYAEGSGIENLSLEDFMQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVA 174
                        456678899*******************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.572161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.19E-36283No hitNo description
SuperFamilySSF554557.98E-29282IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.6389179IPR002487Transcription factor, K-box
PfamPF014861.8E-15106173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRRKIEMKR IEDKSSRQVT FSKRRSGLIK KARELSILCD VDVAVLVFSH RGRLYEFVSG  60
ASSSSSLSQI LRRYQDSTDG KASNVDDETE DSPSTCIQVQ TCGELVKTVE RYAEGSGIEN  120
LSLEDFMQLE KQLNDALVQT RNRKAQLMLE SVATLREKEK MLTQENDQLK DEVAKVKGNL  180
NRGNRTDLEL NGVMEEGALI QCPEPVRTLP LLIEEGECPE PVKTLPLLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-17188183Myocyte-specific enhancer factor 2B
1tqe_Q4e-17188183Myocyte-specific enhancer factor 2B
1tqe_R4e-17188183Myocyte-specific enhancer factor 2B
1tqe_S4e-17188183Myocyte-specific enhancer factor 2B
5f28_A5e-17188183MEF2C
5f28_B5e-17188183MEF2C
5f28_C5e-17188183MEF2C
5f28_D5e-17188183MEF2C
6c9l_A4e-17188183Myocyte-specific enhancer factor 2B
6c9l_B4e-17188183Myocyte-specific enhancer factor 2B
6c9l_C4e-17188183Myocyte-specific enhancer factor 2B
6c9l_D4e-17188183Myocyte-specific enhancer factor 2B
6c9l_E4e-17188183Myocyte-specific enhancer factor 2B
6c9l_F4e-17188183Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845909.11e-166MADS-box protein FLOWERING LOCUS C-like
TrEMBLA0A0K9R7G41e-165A0A0K9R7G4_SPIOL; Uncharacterized protein
STRINGXP_010682731.11e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.41e-37MIKC_MADS family protein