PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_097650_cyaa.t1

Common Name

SOVF_097650

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

FAR1

Protein Properties

Length: 675aa MW: 76409.2 Da PI: 5.555

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_097650_cyaa.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.7	2.2e-14	107	215	2	87
FAR1 2 fYneYAkevGFsvrk.skskkskrngeitkrtfvCskegkreeekkk.....................tekerrtraetrtgCkaklkvkke 71 +Y++Y+k+vGF +++ ++ +k +++e + t++C ++gk++ ++ + + r +r +++++C a++ + + Sp_097650_cyaa.t1 107 YYRSYGKQVGFGITRvKAAYKGGKSKEKRSTTWRCECSGKPDMRRVRngkkiskglevggvlpritdsLVGVRAPRRSKKCDCPAMIYASVN 198 8********9866155566699999***********99888899***********998888999************** PP FAR1 72 kdgkwevtkleleH.nH 87 ++g+w++ +++leH nH Sp_097650_cyaa.t1 199 SQGEWVIRTVVLEHkNH 215 ************566 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-13	107	215	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MEEGNDREAI RLERVDSPGC ELEENEVSAD SNEAASNNQK ENGEVGVTAS INLNVGEGIQ 60 DDERAVCITP LQCDPIPLPL QNVEIENNVV PPKVGMVFVG WLEVEAYYRS YGKQVGFGIT 120 RVKAAYKGGK SKEKRSTTWR CECSGKPDMR RVRNGKKISK GLEVGGVLPR ITDSLVGVRA 180 PRRSKKCDCP AMIYASVNSQ GEWVIRTVVL EHKNHIPNPS LSNCISQNRQ PGMTACKRRK 240 FDRYTQFKEE LKNVIYDCLT AEEFQSQWSR VIEEYHLQSS EWLTQMYGER EMWVPAYMKH 300 LFCAGMRTTQ RVENIHSFFD EYVGRHTRLS EFTGKYCVAM EQRASMERDA DANTARYVRG 360 LATGFKVEKI FQKMYTDAKF AEVQRECARV LYCTGRGETW VTETEVDHLM EDRVWVVCKS 420 SKTEIPSTKR RLYRVRFNTE TSEMEEAMQV VINMVRAMDI NVNECLGKIS MSSVGQCQTM 480 NVLQTPPLTG TVKFAGDAEI RSAETGSGTD AARDPLFTKW NRTVQSTSIT EKSAQNSEQL 540 VSEASVLEHD DDVDDDEGRK RKFEVMKKKK LDVVYSPQVI QVQPSAMHGE CQGQQQELMS 600 PGGMRLMEEA GPASYFTRNI DQEELGKEDD NIEHNMEPRS TGVAEIGGEG GPAAYLTRNI 660 AAKNDMLQWN RISWE

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MEEGNDREAI RLERVDSPGC ELEENEVSAD SNEAASNNQK ENGEVGVTAS INLNVGEGIQ  60
DDERAVCITP LQCDPIPLPL QNVEIENNVV PPKVGMVFVG WLEVEAYYRS YGKQVGFGIT  120
RVKAAYKGGK SKEKRSTTWR CECSGKPDMR RVRNGKKISK GLEVGGVLPR ITDSLVGVRA  180
PRRSKKCDCP AMIYASVNSQ GEWVIRTVVL EHKNHIPNPS LSNCISQNRQ PGMTACKRRK  240
FDRYTQFKEE LKNVIYDCLT AEEFQSQWSR VIEEYHLQSS EWLTQMYGER EMWVPAYMKH  300
LFCAGMRTTQ RVENIHSFFD EYVGRHTRLS EFTGKYCVAM EQRASMERDA DANTARYVRG  360
LATGFKVEKI FQKMYTDAKF AEVQRECARV LYCTGRGETW VTETEVDHLM EDRVWVVCKS  420
SKTEIPSTKR RLYRVRFNTE TSEMEEAMQV VINMVRAMDI NVNECLGKIS MSSVGQCQTM  480
NVLQTPPLTG TVKFAGDAEI RSAETGSGTD AARDPLFTKW NRTVQSTSIT EKSAQNSEQL  540
VSEASVLEHD DDVDDDEGRK RKFEVMKKKK LDVVYSPQVI QVQPSAMHGE CQGQQQELMS  600
PGGMRLMEEA GPASYFTRNI DQEELGKEDD NIEHNMEPRS TGVAEIGGEG GPAAYLTRNI  660
AAKNDMLQWN RISWE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021854247.1	1e-165	protein FAR1-RELATED SEQUENCE 6-like isoform X2
Refseq	XP_021854248.1	1e-167	protein FAR1-RELATED SEQUENCE 6-like isoform X3
TrEMBL	A0A0K9R7N5	0.0	A0A0K9R7N5_SPIOL; Uncharacterized protein
STRING	XP_010682171.1	2e-67	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	5e-23	FAR1 family protein