PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_094630_xhhn.t1
Common NameSOVF_094630
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 325aa    MW: 35748.4 Da    PI: 9.9766
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_094630_xhhn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13133177347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE++l++ +  + G+g+W+ I+r   k+Rt+ q+ s+ qky
  Sp_094630_xhhn.t1 133 PWTEEEHKLFLMGLDKVGKGDWRGISRNYVKTRTPTQVASHAQKY 177
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.100.001727IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.8121227IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.996126182IPR017930Myb domain
SuperFamilySSF466894.34E-16128182IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-15129180IPR006447Myb domain, plants
SMARTSM007177.5E-10130180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-10132176IPR009057Homeodomain-like
PfamPF002496.2E-11133177IPR001005SANT/Myb domain
CDDcd001675.08E-9133177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTAPPSKTQR TCSQCGHNGH NARTCTELSG ALPPPTPGFM LFGVRLTAAE GSVSPSSPPI  60
SPSSSSLSSS SFFRKSMSMN NLSQYEQRQQ DQHNFPLDSS NINNVVPSGY ASDDALHASG  120
CQTRDRERKR GTPWTEEEHK LFLMGLDKVG KGDWRGISRN YVKTRTPTQV ASHAQKYYLR  180
RTNQNRRRRR SSLFDITTDT LSRSSSESQL ASLDTTCHQL KASALHQATQ FPSPYPPSFS  240
TKHSRSIPVP PSSKMASLNL NQSPTTSSPS SSTSTYNTNN KEIEYEPFLS LKLSQQAPSD  300
EESSRRSPTF RGFNDSGGDS IISVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849899.10.0transcription factor MYB1R1
TrEMBLA0A0K9R9Z70.0A0A0K9R9Z7_SPIOL; Uncharacterized protein
STRINGXP_010683349.11e-115(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.22e-58MYB_related family protein