PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_094090_guao.t1
Common NameSOVF_094090
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARF
Protein Properties Length: 648aa    MW: 71854.5 Da    PI: 5.9096
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_094090_guao.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3672.7e-21123223198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++  +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   
  Sp_094090_guao.t1 123 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHRSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL-- 210
                        99****************************964333..4459************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +++el+v+v+r
  Sp_094090_guao.t1 211 RGENGELRVGVRR 223
                        449999*****97 PP
2Auxin_resp111.86.6e-37249331183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aaha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv+d+ ++ W nS+WrsLk
  Sp_094090_guao.t1 249 AAHAIQTGTLFSVFYKPRTSRSEFLVSVNKYLEAKSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVNDSPSSTWANSEWRSLK 331
                        79*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-42114252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-39117238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-19121223No hitNo description
PfamPF023624.8E-19123223IPR003340B3 DNA binding domain
SMARTSM010193.3E-20123225IPR003340B3 DNA binding domain
PROSITE profilePS5086310.447123225IPR003340B3 DNA binding domain
PfamPF065072.9E-34249331IPR010525Auxin response factor
PfamPF023097.0E-7499560IPR033389AUX/IAA domain
SuperFamilySSF542772.29E-12522600No hitNo description
PROSITE profilePS5174529.021523616IPR000270PB1 domain
PfamPF023092.1E-6570613IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MALQGIQQSG GQQEQDALYK ELWYACAGPL VNVPREGERV YYFPQGHMEQ LEASTHQGLD  60
QQMPSFNLPS KILCKVAHIE LRAEPETDEV YAQITLVPER DQSEVSTPDP PVPDPPRCNV  120
HSFCKTLTAS DTSTHGGFSV LRRHADDCLP PLDMSQQPPW QELVATDLHR SEWHFRHIFR  180
GQPRRHLLTT GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRLMRQLNN MPSSVISSHS  240
MHLGVLATAA HAIQTGTLFS VFYKPRTSRS EFLVSVNKYL EAKSHKLSVG MRFKMRFEGD  300
EVPERRFSGT IVGVNDSPSS TWANSEWRSL KVQWDEPSSI VRPERVSPWD LEPLVATNSS  360
NSQPTQRNKR PRPAMMPCSA TATDLSGLGI WKSTSESPVA ACSEIERARD QFSSVTKVGS  420
VGFTANSSLP AISSQSIYWS QRADNVSESL GSVVNKESGE KRKSSAAGCR LFGINLDETS  480
TRVGEDQPVP SLEAESDRSN VNRSDVPSSG GDPDKSSPSK QSRTCTKVHM QGVAVGRAVD  540
LTRFDCYEDL LKKLEELFDI KGELCCSSGR WQVVYTDDED DMMMVGDDPW EEFCSMVRKI  600
FIYTSEEVKR LSPKSKMSVE EEAKPGYTGD AGLPAASEEQ SSAVGPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01636017361Auxin response factor 1
4ldw_A0.01636017361Auxin response factor 1
4ldw_B0.01636017361Auxin response factor 1
4ldx_A0.01636017361Auxin response factor 1
4ldx_B0.01636017361Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368372KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864801.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A0K9R8S60.0A0A0K9R8S6_SPIOL; Auxin response factor
STRINGXP_010682136.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.30.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]