PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_089500_muxp.t1
Common NameSOVF_089500
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LBD
Protein Properties Length: 539aa    MW: 58238.8 Da    PI: 8.718
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_089500_muxp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.4e-403094081100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+kll ++p+++r da++slvyeA++r+rdPvyG++g i++lqqq++  +a
  Sp_089500_muxp.t1 309 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPDNQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQAIHA 400
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        el+++++e
  Sp_089500_muxp.t1 401 ELNAVRAE 408
                        ***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.359308409IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-40309406IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MNVDHHHSKY LHSIKIKEAA AATTTATATG GGGGAGAASF KVGRRRRVMS REVSNLSNSS  60
VEGGGDYHAQ EPAAVPFVWE SSPGTPKRHT IMRSSTNYDH EIDNILLPPL TPPPSYQYHN  120
KHASTKIRPF SKKKKQNDAT CNNNVNLIQS MFPRLSVSRD DSPELSSSSS TKSSSRPSSS  180
SSSSPSSQSC SVVSTPSPIH RHKSSFEYAS VQLDEGEDDM VRSSGSPVST LCFSRRLSCC  240
NARERFEEDG IGKRIKLEID AAKSMVASNN CYDNNNNNHH QIIVERRSQM MGVGVGPPSL  300
GSTLNTITPC AACKLLRRRC AEECPFSPYF SPHEPQKFAA VHKVFGASNV SKLLMEVPDN  360
QRADAANSLV YEANVRLRDP VYGCMGAISA LQQQVQAIHA ELNAVRAEIL KYKYREAANT  420
LMSATNPNNN NHPHSHLHHH HNSLVTSVAA AVIAATLPQV QSPPHQQPLS QPQQDTTPPP  480
RPGTPPPPSA SVVVSSSPSG AASLYTPPPP PPPDHHSGTT NNNGFTSIST DHNSVSYFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3830941211114LOB family transfactor Ramosa2.1
5ly0_B4e-3830941211114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851346.10.0LOB domain-containing protein 15 isoform X1
TrEMBLA0A0K9RA500.0A0A0K9RA50_SPIOL; Uncharacterized protein
STRINGXP_010685965.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-69LOB domain-containing protein 15