PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_087960_dzny.t1 | ||||||||
Common Name | SOVF_087960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TCP | ||||||||
Protein Properties | Length: 325aa MW: 36904.2 Da PI: 6.2564 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.4 | 3e-35 | 152 | 298 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 kdrhski T++g+RdRR+Rls+e+a+ fF+Lqd+LGfdk+s t+eWLl q+k a e++++++ sas++++ + ss++++ + Sp_087960_dzny.t1 152 SNKDRHSKIRTAQGLRDRRMRLSLEVARPFFKLQDMLGFDKASRTVEWLLLQSKSATEEAVQSKNGSASDVTKCTTMSSTASDDCEvdstiv 243 579************************************************************88888777444444444433333455667 PP TCP 89 ...........kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133 k k+ + + kk++++ + + ke+r+ a +ra++rt e+m ++ Sp_087960_dzny.t1 244 vegrkggtstpKVTKKGPkCVKKDEHKMK--KKRTKEERKVAIERAKKRTLERMIQN 298 77777776654333333323344444444..6666699999999******9999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.1E-36 | 152 | 295 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.686 | 153 | 211 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDHPIMFNPS STTTTTTTTT TPSPILYVDN ILNYLLDDLN PNYSNKQEDH YLTSYYQLPS 60 PLIYNEIEGF VTNHDLQFLQ QPSLLGNNLT EDGEHSSIFE VEHQNKVEGD ENENENENEN 120 EINGIVEDCE VMNQTKDVVS HGGLSTKRKR SSNKDRHSKI RTAQGLRDRR MRLSLEVARP 180 FFKLQDMLGF DKASRTVEWL LLQSKSATEE AVQSKNGSAS DVTKCTTMSS TASDDCEVDS 240 TIVVEGRKGG TSTPKVTKKG PKCVKKDEHK MKKKRTKEER KVAIERAKKR TLERMIQNQG 300 GQVKEINHEF VDDADLKWIG ALYQV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849833.1 | 0.0 | transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A0K9RAP2 | 0.0 | A0A0K9RAP2_SPIOL; Uncharacterized protein | ||||
STRING | XP_010695622.1 | 4e-99 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 2e-25 | TCP family protein |