PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_085630_fshk.t1 | ||||||||
Common Name | SOVF_085630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TALE | ||||||||
Protein Properties | Length: 375aa MW: 42112.8 Da PI: 7.0005 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29 | 1.8e-09 | 293 | 327 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Sp_085630_fshk.t1 293 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 327 569*****************************885 PP | |||||||
2 | ELK | 39.9 | 8.6e-14 | 247 | 268 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsL+qEF+ Sp_085630_fshk.t1 247 ELKGQLLRKYSGYLGSLRQEFL 268 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.6E-18 | 101 | 145 | IPR005540 | KNOX1 |
Pfam | PF03790 | 9.5E-23 | 103 | 139 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.5E-26 | 156 | 207 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.8E-20 | 160 | 206 | IPR005541 | KNOX2 |
SMART | SM01188 | 7.4E-8 | 247 | 268 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.366 | 247 | 267 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.1E-10 | 247 | 268 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.924 | 267 | 330 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-20 | 269 | 343 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.2E-13 | 269 | 334 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-28 | 272 | 332 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.54E-12 | 279 | 331 | No hit | No description |
Pfam | PF05920 | 6.8E-17 | 287 | 326 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 305 | 328 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MENDNNNNNN SNGLYPMIMM QPPSLSHHHH HQHHHNSNHH NNNNHNNNKL CCCSSSSSVT 60 VAAAAAAAEC YDNHQHHQQQ HQQQLMGLGM ENLTSSSNNG GNIKAKIMSH PHYPRLLSAF 120 VNCQKVGAPP EVVARLEEAE TMMMNQGGGR GGGSGGGGYI GEDPGLDQFM EAYCEMLGKY 180 EQELTKPFKE AMLFLSRIEC QFKALTLTSP SHSPSSACGE IPDRNGSSEE DIDVNNNFID 240 PSAEDRELKG QLLRKYSGYL GSLRQEFLKK RKKGKLPKEA RQELLDWWSR HYKWPYPSES 300 QKLALAESTG LDQKQINNWF INQRKRHWKP SEDMQFVVMD AASHSHAHSH AHSHYGGYMD 360 NVLGPPYPMD VSSTL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 262 | 271 | LRQEFLKKRK |
2 | 268 | 272 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021854196.1 | 0.0 | homeobox protein knotted-1-like LET6 | ||||
Swissprot | P46608 | 1e-128 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A0K9RBF5 | 0.0 | A0A0K9RBF5_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010686774.1 | 1e-151 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-114 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
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