PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_085570_pdgx.t1

Common Name

SOVF_085570

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NF-YB

Protein Properties

Length: 257aa MW: 29728.4 Da PI: 7.1272

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_085570_pdgx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.4	6.6e-56	51	146	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +eqdrflPianv+rimkk+lP+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plk yl++yr++ Sp_085570_pdgx.t1 51 KEQDRFLPIANVGRIMKKTLPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVNPLKFYLNRYRDT 142 89****************************************************************************************** PP NF-YB 94 egek 97 egek Sp_085570_pdgx.t1 143 EGEK 146 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.3E-54	44	188	IPR009072	Histone-fold
SuperFamily	SSF47113	1.71E-40	53	172	IPR009072	Histone-fold
Pfam	PF00808	4.5E-28	56	120	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.4E-18	84	102	No hit	No description
PROSITE pattern	PS00685	0	87	103	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.4E-18	103	121	No hit	No description
PRINTS	PR00615	4.4E-18	122	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MDGENLRIKQ ERIKEESPER PSSKTNNNNN NDNNNNNNNN NNNNNNNTSN KEQDRFLPIA 60 NVGRIMKKTL PSNGKISKDA KETVQECVSE FISFVTGEAS DKCQREKRKT INGDDIIWAI 120 TTLGFEDYVN PLKFYLNRYR DTEGEKVNLP KHQQHQQQQQ QRTTTTTDHQ QQLHQHRLLQ 180 QQHQQQHEHF QQQVVDQGLS PFGSTTNSSI YSSTNTLLLP HQPPFPGPEQ PFSLPFSPSS 240 IQKNYQHQDQ IDSVGHW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-45	51	141	2	92	Transcription factor HapC (Eurofung)
4g92_B	5e-45	51	141	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862024.1	1e-154	nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	1e-67	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A0K9RBG3	0.0	A0A0K9RBG3_SPIOL; Uncharacterized protein
STRING	XP_010674594.1	3e-96	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	4e-64	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]