PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_085250_rzgq.t1 | ||||||||
Common Name | SOVF_085250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TALE | ||||||||
Protein Properties | Length: 444aa MW: 50138.9 Da PI: 8.2675 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.8 | 5.8e-11 | 271 | 308 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LA+k+gL+ +qV++WF N R + Sp_085250_rzgq.t1 271 FEHflHPYPTDSDKQMLAEKTGLSRSQVSNWFTNARVR 308 665559******************************98 PP | |||||||
2 | BELL | 80.7 | 1.9e-26 | 153 | 214 | 11 | 72 |
BELL 11 kLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 L+s+l+eV+krYk y++q+q + sFe vaglg+a+p+ +A +a+ rhF+cLk+ai +qi Sp_085250_rzgq.t1 153 NLVSMLHEVYKRYKLYCQQMQSAVTSFESVAGLGNAAPFLCFAVRAMFRHFQCLKNAILDQI 214 69**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.4E-24 | 90 | 212 | IPR006563 | POX domain |
Pfam | PF07526 | 1.7E-26 | 96 | 210 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.73 | 249 | 312 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.97E-13 | 252 | 313 | No hit | No description |
SMART | SM00389 | 2.4E-12 | 252 | 316 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-17 | 254 | 318 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-28 | 255 | 317 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.4E-18 | 269 | 308 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MDDPFHVPQQ SRRHKLRYHH HHHNHQDDDV IVNPQHHPFL SPLQILQSTS SASTSADHPS 60 LMAAASTNLS LSSSSTHARA YLPSPVGPFT GYASILGRSR FLRPAQDLLE EVSRVSGIPL 120 DKHGRPNNNI LEDSGTLFND TDDDLSLRCS NPNLVSMLHE VYKRYKLYCQ QMQSAVTSFE 180 SVAGLGNAAP FLCFAVRAMF RHFQCLKNAI LDQIRVTSKA FGNVDSRRDS TPGSCSEDKG 240 GPASNFLQHP VWRSQRGFPD KAVAVLRNWL FEHFLHPYPT DSDKQMLAEK TGLSRSQVSN 300 WFTNARVRLW KPMVEEMHAL ERKTQCSKAE DTERIVNLSN DHQTSLHSQL SEKDFQTTYS 360 HREEDNSQCK RSRIEAFARA EQGKEQLRRL CNRLPSNQVL DIGGSHTGQQ HLSHSSAMGS 420 NQDNTTGLSW SNHGQIVPFW LAKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-15 | 258 | 316 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-15 | 258 | 316 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 1e-15 | 258 | 316 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-15 | 258 | 316 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021845628.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 2e-69 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A0K9RBJ4 | 0.0 | A0A0K9RBJ4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010687910.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 1e-71 | TALE family protein |