PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_081010_gkdd.t1

Common Name

SOVF_081010

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Trihelix

Protein Properties

Length: 749aa MW: 82951.3 Da PI: 6.365

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_081010_gkdd.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.4	1.1e-29	72	156	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r++m+ +r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+ ++ + +t+++f+qlea Sp_081010_gkdd.t1 72 RWPRQETIALLKIRSDMDVVFRDSSLKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKDGRTGK--ADGKTYRFFEQLEA 156 8******************************************************************96..66678*****85 PP
2	trihelix	106.4	1.9e-33	556	641	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++++++++ k+plWee+s++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Sp_081010_gkdd.t1 556 RWPKAEVQALINLRTNLDQKYQENGPKGPLWEEISSAMRKLGYNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 641 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.853	65	129	IPR017877	Myb-like domain
SMART	SM00717	0.012	69	131	IPR001005	SANT/Myb domain
Pfam	PF13837	1.3E-19	71	157	No hit	No description
CDD	cd12203	5.55E-26	71	136	No hit	No description
SMART	SM00717	0.0012	553	615	IPR001005	SANT/Myb domain
Pfam	PF13837	5.3E-23	555	642	No hit	No description
PROSITE profile	PS50090	7.422	555	613	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.4E-4	555	612	IPR009057	Homeodomain-like
CDD	cd12203	8.80E-30	555	620	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MLGTSNLIGS SGDGGTSTHE AGGAGETEGL VRAPPIMTTG IGVGDDEDKL QSGGGSGGVD 60 LFESDRSTGG NRWPRQETIA LLKIRSDMDV VFRDSSLKGP LWEEVSRKMA ELGYHRSSKK 120 CKEKFENVYK YHKRTKDGRT GKADGKTYRF FEQLEALEQH HLAMAASSAL PPLPQAVSQV 180 TPRGQSQSQS QSQSQAPAQA AVPVTMVIPA GTNPANVTVP SNPHPISVVH TTCISPQPHQ 240 QQQMNVNPTN QASQLQSSPQ LQPQPQPQPQ PQVIQQQQRL HNLQQQPMGM GIPTHDSIQM 300 ENLSSPSPSA TQSSSSSTSS DEELMGTRKR KRKWKDFFER LMREVIDKQE ELQKRFLDTV 360 EKREHDRLAR EEAWKLQEMA RMNREHDILL QERSMAAAKD AALISFLQKL SDQQQIPLPL 420 PVQAQAQAQA QAQAQAQAQA QPQPQSQSQP QVRAAVPTVV STTPTQPQQP QPPQVLQQPQ 480 LQPQPQVHVP EIPVSLPSPT LQTQPLPQSQ PLTPLPQQSP PQQQQALVVM NTNNGDSGDL 540 QKASNGDNLL QASSSRWPKA EVQALINLRT NLDQKYQENG PKGPLWEEIS SAMRKLGYNR 600 NSKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYRARNKME INPTPMTTYG 660 QPQQPQTKHE GNLSTAMAPI MAQPEQQWPA PDQTMEDQGS ENQDDSEDDM DEEDDDDQGS 720 GYEIVANNNV NAGSMSTTTT ATRTATTAE

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MLGTSNLIGS SGDGGTSTHE AGGAGETEGL VRAPPIMTTG IGVGDDEDKL QSGGGSGGVD  60
LFESDRSTGG NRWPRQETIA LLKIRSDMDV VFRDSSLKGP LWEEVSRKMA ELGYHRSSKK  120
CKEKFENVYK YHKRTKDGRT GKADGKTYRF FEQLEALEQH HLAMAASSAL PPLPQAVSQV  180
TPRGQSQSQS QSQSQAPAQA AVPVTMVIPA GTNPANVTVP SNPHPISVVH TTCISPQPHQ  240
QQQMNVNPTN QASQLQSSPQ LQPQPQPQPQ PQVIQQQQRL HNLQQQPMGM GIPTHDSIQM  300
ENLSSPSPSA TQSSSSSTSS DEELMGTRKR KRKWKDFFER LMREVIDKQE ELQKRFLDTV  360
EKREHDRLAR EEAWKLQEMA RMNREHDILL QERSMAAAKD AALISFLQKL SDQQQIPLPL  420
PVQAQAQAQA QAQAQAQAQA QPQPQSQSQP QVRAAVPTVV STTPTQPQQP QPPQVLQQPQ  480
LQPQPQVHVP EIPVSLPSPT LQTQPLPQSQ PLTPLPQQSP PQQQQALVVM NTNNGDSGDL  540
QKASNGDNLL QASSSRWPKA EVQALINLRT NLDQKYQENG PKGPLWEEIS SAMRKLGYNR  600
NSKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYRARNKME INPTPMTTYG  660
QPQQPQTKHE GNLSTAMAPI MAQPEQQWPA PDQTMEDQGS ENQDDSEDDM DEEDDDDQGS  720
GYEIVANNNV NAGSMSTTTT ATRTATTAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	327	332	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021848795.1	0.0	trihelix transcription factor GTL1
Swissprot	Q39117	1e-79	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A0K9RCU7	0.0	A0A0K9RCU7_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	8e-57	Trihelix family protein