PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_079400_kktc.t1
Common NameSOVF_079400
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 688aa    MW: 74867.8 Da    PI: 6.7479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_079400_kktc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.8e-16449495455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Sp_079400_kktc.t1 449 VHNQSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 495
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.38E-16441499No hitNo description
SuperFamilySSF474592.36E-20442506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-20442503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.133445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-13449495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-17451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MPLTELVNMF KGKMEVPHEV ASTSIDPSSR PDTDCVELVW ENGQIMMQGN KPRKSNVSNN  60
FQSFGIKPQD GRNVTNYSKM TKFSTMDSEM VDFPFSVPSC EMGMDQNVDL VPWLNYPMEE  120
PLHNDYTSDF LNELSGVTIS DLLTENHLPY RERKSSFHGD GHETSASLKH INSSSKLFSS  180
DKKDNRGGSS EVPQFLLPFQ HSVPRSGISD ITANNADNIH HFGSRDSTLN PSSLSAFTSL  240
RLQKLDAGQA STTTTSSGFT NFPCFSRPSS VSRANHVTVN PSKRLEYDNK RCTLSSSNPG  300
SSTLVNLDIG YSQKEIVSHN QSIMAPENGI SEALPTKPTE ELLSANQPLH REDIANSHAS  360
QNQVCDAPMS KVGASGDRNM EPVVAASSVC SANSGADRTS NEPARNSKRK SRETTESEGP  420
SEEIEEESVG AKKSGHGRGG SKRSRAAEVH NQSERRRRDR INEKMRALQE LIPNCNKADK  480
ASMLDEAIEY LKTLQLQVQV LSMGAGLFMH PMMLPPGMLP IHGAHMPHFS PMGLGMGMGM  540
GMGFGMNMVN MNTGTKMVPY QGSHYPIPGT GPMFHGMPGS NLQTFPHPGQ ALPMSLQQQA  600
SIVPASISGS HLKMPMGLNV SGVSHLAPSS IKTDANPQVI SMNQATNQAS KEGFQQFALC  660
HNQAQGVNAS ETAEAANRKD DRNLLPDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453458ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847529.10.0transcription factor PIF3-like isoform X1
RefseqXP_021847538.10.0transcription factor PIF3-like isoform X1
TrEMBLA0A0K9RD810.0A0A0K9RD81_SPIOL; Uncharacterized protein
STRINGXP_010674470.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-28phytochrome interacting factor 3