PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_079110_ejkt.t2

Common Name

SOVF_079110

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 346aa MW: 38059.6 Da PI: 9.809

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_079110_ejkt.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.9	7.5e-11	48	98	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++ Sp_079110_ejkt.t2 48 KQKWTAEEEAALKAGVLKHGAGKWRTILKDPEfcgvlFLRSNVDLKDKWRN 98 79*********************************55********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.83E-15	45	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.8E-13	46	99	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-6	47	102	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.41	48	100	IPR017877	Myb-like domain
Pfam	PF00249	8.1E-8	48	98	IPR001005	SANT/Myb domain
CDD	cd11660	1.12E-18	49	99	No hit	No description
SuperFamily	SSF46785	7.62E-18	165	245	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	2.4E-14	166	231	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	4.3E-15	167	238	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	24.13	168	236	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	1.6E-8	173	229	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0000786	Cellular Component	nucleosome
GO:0005730	Cellular Component	nucleolus
GO:0003691	Molecular Function	double-stranded telomeric DNA binding
GO:0033613	Molecular Function	activating transcription factor binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0070491	Molecular Function	repressing transcription factor binding
GO:1990841	Molecular Function	promoter-specific chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
CITTPSRRRR YQSAIVNFRF GDSNYLSFSP AAILGVAECR QLAMGAPKQK WTAEEEAALK 60 AGVLKHGAGK WRTILKDPEF CGVLFLRSNV DLKDKWRNMS VMPSGFGTRD HKPRGLPKRV 120 PTQSSPIKQE ENNTSVSDVP QSDEDMPDVK TVATSSAPVE ISSAPKRSIV RLDNLILEAI 180 TNLKEPGGCN KTAIASYIED QYWAPPDFKR VLSAKLKFLT SSGKLIKVKR NYQISPSMAF 240 PEKRRNLPII AQEGRQVNLP KIDREDLSML KSQIDLELAK MRSMTPQEAA AAAARAVAEA 300 EAAIAEAEEA AREAEEAEAD AEAAQAFADA ATKMLRGRSA PKMMRA

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

CITTPSRRRR YQSAIVNFRF GDSNYLSFSP AAILGVAECR QLAMGAPKQK WTAEEEAALK  60
AGVLKHGAGK WRTILKDPEF CGVLFLRSNV DLKDKWRNMS VMPSGFGTRD HKPRGLPKRV  120
PTQSSPIKQE ENNTSVSDVP QSDEDMPDVK TVATSSAPVE ISSAPKRSIV RLDNLILEAI  180
TNLKEPGGCN KTAIASYIED QYWAPPDFKR VLSAKLKFLT SSGKLIKVKR NYQISPSMAF  240
PEKRRNLPII AQEGRQVNLP KIDREDLSML KSQIDLELAK MRSMTPQEAA AAAARAVAEA  300
EAAIAEAEEA AREAEEAEAD AEAAQAFADA ATKMLRGRSA PKMMRA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00607	ChIP-seq	Transfer from AT1G49950	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021836307.1	0.0	telomere repeat-binding factor 1 isoform X3
Swissprot	Q8VWK4	4e-88	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A0K9RDL1	0.0	A0A0K9RDL1_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010672702.1	1e-153	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	3e-88	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]