PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_078730_emez.t1
Common NameSOVF_078730
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 292aa    MW: 30943.7 Da    PI: 9.565
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_078730_emez.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-073357226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       k ++C  f+ t  C++G++C+F H 
  Sp_078730_emez.t1 33 KSKPCTKFFSTSGCPFGENCHFLHH 57
                       7789********************6 PP
2zf-CCCH26.79.8e-0994119227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt+lC+ f+    CkyGd+C+FaHg+
  Sp_078730_emez.t1  94 KTRLCNKFSSPDGCKYGDKCHFAHGE 119
                        8***********************96 PP
3zf-CCCH32.41.6e-10259283126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y+t++C +f + G C +GdrC+FaHg
  Sp_078730_emez.t1 259 YRTKICENFTK-GSCTFGDRCHFAHG 283
                        89*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0233158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.543159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-63258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-83357IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-53357IPR000571Zinc finger, CCCH-type
SMARTSM003560.003692119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.41392120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-892123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-1394123IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-694119IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.46E-15161236IPR004088K Homology domain, type 1
SMARTSM003222.1E-11164234IPR004087K Homology domain
PROSITE profilePS5008414.823165229IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.2E-16165235IPR004088K Homology domain, type 1
PfamPF000131.6E-11167230IPR004088K Homology domain, type 1
CDDcd001059.79E-16167230No hitNo description
Gene3DG3DSA:4.10.1000.101.7E-15255289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8257288IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7258284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.586258285IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-8259283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDGRKRGRHD AGSAHSNGGF KKHKQETDGI GSKSKPCTKF FSTSGCPFGE NCHFLHHVAG  60
GYNAVAQLMN LPPMSRNAPP PPPQAHNGSA ATAKTRLCNK FSSPDGCKYG DKCHFAHGEW  120
ELNKSVAPPT FDDPRARGGH PMHGRFSGRH EPPVPTGFGA TFGESATAKI SVDASLAGAI  180
IGKSGVNSKQ ICRQTGVKLS IRDHDSDSTK RNIELEGTLD QIKMATDMVH DLVASVSANA  240
PFKGSGGPAP PHGPASTNYR TKICENFTKG SCTFGDRCHF AHGAAELRKS GV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845235.10.0zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R02e-96C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9RDP70.0A0A0K9RDP7_SPIOL; Uncharacterized protein
STRINGXP_010672666.11e-166(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-59C3H family protein